cd-hit on AUR (Arch User Repository)

Last updated: November 07,2024

1. Install "cd-hit" effortlessly via AUR with the help of a helper(YAY)

a. Install YAY (https://github.com/Jguer/yay)


    
        
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                sudo pacman -S --needed git base-devel && git clone https://aur.archlinux.org/yay.git && cd yay && makepkg -si
            
                    
    
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b. Install cd-hit on Arch using YAY

* (Optional) Uninstall cd-hit on Arch using YAY

2. Manually Install "cd-hit" via AUR

a. Ensure you have the base development tools and git installed with:


    
        
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                sudo pacman -S --needed
            
                        
                base-devel git
            
                    
    
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b. Clone cd-hit's git locally


    
        
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                git clone https://aur.archlinux.org/cd-hit.git 
            
                        
                ~/cd-hit
            
                    
    
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c. Go to ~/cd-hit folder and install it


   
    
        
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                cd
            
                        
                ~/cd-hit
            
                    
    
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                makepkg -si
            
                    
    
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3. Information about the cd-hit package on Arch User Repository (AUR)

ID: 695034
Name: cd-hit
PackageBaseID: 84352
PackageBase: cd-hit
Version: 4.8.1-1
Description: clustering DNA/protein sequence database at high identity with tolerance
URL: http://weizhongli-lab.org/cd-hit/
NumVotes: 2
Popularity: 0
OutOfDate:
Maintainer: fbearoff
Submitter: wookietreiber
FirstSubmitted: 1407141136
LastModified: 1581275949
URLPath: /cgit/aur.git/snapshot/cd-hit.tar.gz