gatk on AUR (Arch User Repository)
Last updated: November 23,2024
1. Install "gatk" effortlessly via AUR with the help of a helper(YAY)
a. Install YAY (https://github.com/Jguer/yay)
$
sudo pacman -S --needed git base-devel && git clone https://aur.archlinux.org/yay.git && cd yay && makepkg -si
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b. Install gatk on Arch using YAY
$
yay -S
gatk
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* (Optional) Uninstall gatk on Arch using YAY
$
yay -Rns
gatk
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2. Manually Install "gatk" via AUR
a. Ensure you have the base development tools and git installed with:
$
sudo pacman -S --needed
base-devel git
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b. Clone gatk's git locally
$
git clone https://aur.archlinux.org/gatk.git
~/gatk
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c. Go to ~/gatk folder and install it
$
cd
~/gatk
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$
makepkg -si
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3. Information about the gatk package on Arch User Repository (AUR)
ID: 1369393
Name: gatk
PackageBaseID: 178040
PackageBase: gatk
Version: 4.5.0.0-1
Description: Genome Analysis Toolkit https://doi.org/10.1101/gr.107524.110
URL: https://software.broadinstitute.org/gatk
NumVotes: 1
Popularity: 0.001075
OutOfDate:
Maintainer: malacology
Submitter: malacology
FirstSubmitted: 1650212995
LastModified: 1702512504
URLPath: /cgit/aur.git/snapshot/gatk.tar.gz
Name: gatk
PackageBaseID: 178040
PackageBase: gatk
Version: 4.5.0.0-1
Description: Genome Analysis Toolkit https://doi.org/10.1101/gr.107524.110
URL: https://software.broadinstitute.org/gatk
NumVotes: 1
Popularity: 0.001075
OutOfDate:
Maintainer: malacology
Submitter: malacology
FirstSubmitted: 1650212995
LastModified: 1702512504
URLPath: /cgit/aur.git/snapshot/gatk.tar.gz