gatk on AUR (Arch User Repository)

Last updated: June 26,2024

1. Install "gatk" effortlessly via AUR with the help of a helper(YAY)

a. Install YAY (https://github.com/Jguer/yay)


    
        
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                sudo pacman -S --needed git base-devel && git clone https://aur.archlinux.org/yay.git && cd yay && makepkg -si
            
                    
    
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b. Install gatk on Arch using YAY

* (Optional) Uninstall gatk on Arch using YAY

2. Manually Install "gatk" via AUR

a. Ensure you have the base development tools and git installed with:


    
        
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                sudo pacman -S --needed
            
                        
                base-devel git
            
                    
    
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b. Clone gatk's git locally


    
        
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                git clone https://aur.archlinux.org/gatk.git 
            
                        
                ~/gatk
            
                    
    
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c. Go to ~/gatk folder and install it


   
    
        
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                cd
            
                        
                ~/gatk
            
                    
    
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                makepkg -si
            
                    
    
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3. Information about the gatk package on Arch User Repository (AUR)

ID: 1369393
Name: gatk
PackageBaseID: 178040
PackageBase: gatk
Version: 4.5.0.0-1
Description: Genome Analysis Toolkit https://doi.org/10.1101/gr.107524.110
URL: https://software.broadinstitute.org/gatk
NumVotes: 1
Popularity: 0.001075
OutOfDate:
Maintainer: malacology
Submitter: malacology
FirstSubmitted: 1650212995
LastModified: 1702512504
URLPath: /cgit/aur.git/snapshot/gatk.tar.gz