gatk-bin on AUR (Arch User Repository)

Last updated: May 18,2024

1. Install "gatk-bin" effortlessly via AUR with the help of a helper(YAY)

a. Install YAY (https://github.com/Jguer/yay)


    
        
            $
        

        
            
                sudo pacman -S --needed git base-devel && git clone https://aur.archlinux.org/yay.git && cd yay && makepkg -si
            
                    
    
    Copied

b. Install gatk-bin on Arch using YAY

* (Optional) Uninstall gatk-bin on Arch using YAY

2. Manually Install "gatk-bin" via AUR

a. Ensure you have the base development tools and git installed with:


    
        
            $
        

        
            
                sudo pacman -S --needed
            
                        
                base-devel git
            
                    
    
    Copied

b. Clone gatk-bin's git locally


    
        
            $
        

        
            
                git clone https://aur.archlinux.org/gatk-bin.git 
            
                        
                ~/gatk-bin
            
                    
    
    Copied

c. Go to ~/gatk-bin folder and install it


   
    
        
            $
        

        
            
                cd
            
                        
                ~/gatk-bin
            
                    
    
    Copied

    

   
    
        
            $
        

        
            
                makepkg -si
            
                    
    
    Copied

3. Information about the gatk-bin package on Arch User Repository (AUR)

ID: 1369871
Name: gatk-bin
PackageBaseID: 134345
PackageBase: gatk-bin
Version: 4.5.0.0-1
Description: Variant discovery in high-throughput bioinformatics sequencing data
URL: https://software.broadinstitute.org/gatk-bin
NumVotes: 1
Popularity: 0
OutOfDate:
Maintainer: 46620
Submitter: Pastafarianist
FirstSubmitted: 1531916354
LastModified: 1702580256
URLPath: /cgit/aur.git/snapshot/gatk-bin.tar.gz