r-codex on AUR (Arch User Repository)

Last updated: January 13,2025

1. Install "r-codex" effortlessly via AUR with the help of a helper(YAY)

a. Install YAY (https://github.com/Jguer/yay)


    
        
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                sudo pacman -S --needed git base-devel && git clone https://aur.archlinux.org/yay.git && cd yay && makepkg -si
            
                    
    
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b. Install r-codex on Arch using YAY

* (Optional) Uninstall r-codex on Arch using YAY

2. Manually Install "r-codex" via AUR

a. Ensure you have the base development tools and git installed with:


    
        
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                sudo pacman -S --needed
            
                        
                base-devel git
            
                    
    
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b. Clone r-codex's git locally


    
        
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                git clone https://aur.archlinux.org/r-codex.git 
            
                        
                ~/r-codex
            
                    
    
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c. Go to ~/r-codex folder and install it


   
    
        
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                cd
            
                        
                ~/r-codex
            
                    
    
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                makepkg -si
            
                    
    
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3. Information about the r-codex package on Arch User Repository (AUR)

ID: 1342644
Name: r-codex
PackageBaseID: 180007
PackageBase: r-codex
Version: 1.34.0-1
Description: A Normalization and Copy Number Variation Detection Method for Whole Exome Sequencing
URL: https://bioconductor.org/packages/CODEX
NumVotes: 0
Popularity: 0
OutOfDate:
Maintainer: BioArchLinuxBot
Submitter: BioArchLinuxBot
FirstSubmitted: 1654469350
LastModified: 1698406339
URLPath: /cgit/aur.git/snapshot/r-codex.tar.gz