r-compartmap on AUR (Arch User Repository)

Last updated: January 14,2025

1. Install "r-compartmap" effortlessly via AUR with the help of a helper(YAY)

a. Install YAY (https://github.com/Jguer/yay)


    
        
            $
        

        
            
                sudo pacman -S --needed git base-devel && git clone https://aur.archlinux.org/yay.git && cd yay && makepkg -si
            
                    
    
    Copied

b. Install r-compartmap on Arch using YAY


    
        
            $
        

        
            
                yay -S
            
                        
                r-compartmap
            
                    
    
    Copied

* (Optional) Uninstall r-compartmap on Arch using YAY


    
        
            $
        

        
            
                yay -Rns
            
                        
                r-compartmap
            
                    
    
    Copied

2. Manually Install "r-compartmap" via AUR

a. Ensure you have the base development tools and git installed with:


    
        
            $
        

        
            
                sudo pacman -S --needed
            
                        
                base-devel git
            
                    
    
    Copied

b. Clone r-compartmap's git locally


    
        
            $
        

        
            
                git clone https://aur.archlinux.org/r-compartmap.git 
            
                        
                ~/r-compartmap
            
                    
    
    Copied

c. Go to ~/r-compartmap folder and install it


   
    
        
            $
        

        
            
                cd
            
                        
                ~/r-compartmap
            
                    
    
    Copied

    

   
    
        
            $
        

        
            
                makepkg -si
            
                    
    
    Copied

3. Information about the r-compartmap package on Arch User Repository (AUR)

ID: 1408003
Name: r-compartmap
PackageBaseID: 180024
PackageBase: r-compartmap
Version: 1.18.0-2
Description: Higher-order chromatin domain inference in single cells from scRNA-seq and scATAC-seq
URL: https://bioconductor.org/packages/compartmap
NumVotes: 0
Popularity: 0
OutOfDate:
Maintainer: BioArchLinuxBot
Submitter: BioArchLinuxBot
FirstSubmitted: 1654469745
LastModified: 1707739536
URLPath: /cgit/aur.git/snapshot/r-compartmap.tar.gz