r-decontam on AUR (Arch User Repository)

Last updated: October 07,2024

1. Install "r-decontam" effortlessly via AUR with the help of a helper(YAY)

a. Install YAY (https://github.com/Jguer/yay)


    
        
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                sudo pacman -S --needed git base-devel && git clone https://aur.archlinux.org/yay.git && cd yay && makepkg -si
            
                    
    
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b. Install r-decontam on Arch using YAY

* (Optional) Uninstall r-decontam on Arch using YAY

2. Manually Install "r-decontam" via AUR

a. Ensure you have the base development tools and git installed with:


    
        
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                sudo pacman -S --needed
            
                        
                base-devel git
            
                    
    
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b. Clone r-decontam's git locally


    
        
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                git clone https://aur.archlinux.org/r-decontam.git 
            
                        
                ~/r-decontam
            
                    
    
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c. Go to ~/r-decontam folder and install it


   
    
        
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                cd
            
                        
                ~/r-decontam
            
                    
    
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                makepkg -si
            
                    
    
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3. Information about the r-decontam package on Arch User Repository (AUR)

ID: 1340205
Name: r-decontam
PackageBaseID: 180153
PackageBase: r-decontam
Version: 1.22.0-1
Description: Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
URL: https://bioconductor.org/packages/decontam
NumVotes: 0
Popularity: 0
OutOfDate:
Maintainer: BioArchLinuxBot
Submitter: BioArchLinuxBot
FirstSubmitted: 1654472810
LastModified: 1698266796
URLPath: /cgit/aur.git/snapshot/r-decontam.tar.gz