r-deseq2 on AUR (Arch User Repository)

Last updated: December 27,2024

1. Install "r-deseq2" effortlessly via AUR with the help of a helper(YAY)

a. Install YAY (https://github.com/Jguer/yay)


    
        
            $
        

        
            
                sudo pacman -S --needed git base-devel && git clone https://aur.archlinux.org/yay.git && cd yay && makepkg -si
            
                    
    
    Copied

b. Install r-deseq2 on Arch using YAY

* (Optional) Uninstall r-deseq2 on Arch using YAY

2. Manually Install "r-deseq2" via AUR

a. Ensure you have the base development tools and git installed with:


    
        
            $
        

        
            
                sudo pacman -S --needed
            
                        
                base-devel git
            
                    
    
    Copied

b. Clone r-deseq2's git locally


    
        
            $
        

        
            
                git clone https://aur.archlinux.org/r-deseq2.git 
            
                        
                ~/r-deseq2
            
                    
    
    Copied

c. Go to ~/r-deseq2 folder and install it


   
    
        
            $
        

        
            
                cd
            
                        
                ~/r-deseq2
            
                    
    
    Copied

    

   
    
        
            $
        

        
            
                makepkg -si
            
                    
    
    Copied

3. Information about the r-deseq2 package on Arch User Repository (AUR)

ID: 1360093
Name: r-deseq2
PackageBaseID: 139652
PackageBase: r-deseq2
Version: 1.42.0-2
Description: Differential gene expression analysis based on the negative binomial distribution.
URL: https://bioconductor.org/packages/DESeq2
NumVotes: 2
Popularity: 7.0E-6
OutOfDate:
Maintainer: vejnar
Submitter: vejnar
FirstSubmitted: 1550257974
LastModified: 1701020527
URLPath: /cgit/aur.git/snapshot/r-deseq2.tar.gz