r-lineagespot on AUR (Arch User Repository)

Last updated: October 06,2024

1. Install "r-lineagespot" effortlessly via AUR with the help of a helper(YAY)

a. Install YAY (https://github.com/Jguer/yay)


    
        
            $
        

        
            
                sudo pacman -S --needed git base-devel && git clone https://aur.archlinux.org/yay.git && cd yay && makepkg -si
            
                    
    
    Copied

b. Install r-lineagespot on Arch using YAY


    
        
            $
        

        
            
                yay -S
            
                        
                r-lineagespot
            
                    
    
    Copied

* (Optional) Uninstall r-lineagespot on Arch using YAY


    
        
            $
        

        
            
                yay -Rns
            
                        
                r-lineagespot
            
                    
    
    Copied

2. Manually Install "r-lineagespot" via AUR

a. Ensure you have the base development tools and git installed with:


    
        
            $
        

        
            
                sudo pacman -S --needed
            
                        
                base-devel git
            
                    
    
    Copied

b. Clone r-lineagespot's git locally


    
        
            $
        

        
            
                git clone https://aur.archlinux.org/r-lineagespot.git 
            
                        
                ~/r-lineagespot
            
                    
    
    Copied

c. Go to ~/r-lineagespot folder and install it


   
    
        
            $
        

        
            
                cd
            
                        
                ~/r-lineagespot
            
                    
    
    Copied

    

   
    
        
            $
        

        
            
                makepkg -si
            
                    
    
    Copied

3. Information about the r-lineagespot package on Arch User Repository (AUR)

ID: 1367360
Name: r-lineagespot
PackageBaseID: 200430
PackageBase: r-lineagespot
Version: 1.6.0-1
Description: Detection of SARS-CoV-2 lineages in wastewater samples using next-generation sequencing
URL: https://bioconductor.org/packages/lineagespot
NumVotes: 0
Popularity: 0
OutOfDate:
Maintainer: pekkarr
Submitter: pekkarr
FirstSubmitted: 1702207954
LastModified: 1702207954
URLPath: /cgit/aur.git/snapshot/r-lineagespot.tar.gz