How to Install and Uninstall atropos Package on Kali Linux

Last updated: November 26,2024

1. Install "atropos" package

In this section, we are going to explain the necessary steps to install atropos on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                atropos
            
                    
    
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2. Uninstall "atropos" package

Please follow the guidelines below to uninstall atropos on Kali Linux:


    
        
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                sudo apt remove
            
                        
                atropos
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the atropos package on Kali Linux

Package: atropos
Version: 1.1.32+dfsg-1
Installed-Size: 1176
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libc6 (>= 2.4), python3 (<< 3.13), python3 (>= 3.11~), python3:any, python3-pysam
Recommends: python3-jinja2
Size: 268700
SHA256: fcb8bf61341106015a71c4b7eeaf20ed1e7cf4c5e2d9a317656be0a621e3610b
SHA1: e67a744871be916c3cebd6643c7151bdeffdc0fa
MD5sum: 6a650980291fc09f9b88f8a83d4aba44
Description: NGS read trimming tool that is specific, sensitive, and speedy
Atropos is tool for specific, sensitive, and speedy trimming of NGS
reads. It is a fork of the venerable Cutadapt read trimmer, with the
primary improvements being:
.
1. Multi-threading support, including an extremely fast "parallel
write" mode.
2. Implementation of a new insert alignment-based trimming algorithm
for paired-end reads that is substantially more sensitive and
specific than the original Cutadapt adapter alignment-based
algorithm. This algorithm can also correct mismatches between the
overlapping portions of the reads.
3. Options for trimming specific types of data (miRNA, bisulfite-seq).
4. A new command ('detect') that will detect adapter sequences and
other potential contaminants.
5. A new command ('error') that will estimate the sequencing error
rate, which helps to select the appropriate adapter- and quality-
trimming parameter values.
6. A new command ('qc') that generates read statistics similar to
FastQC. The trim command can also compute read statistics both
before and after trimming (using the '--stats' option).
7. Improved summary reports, including support for serialization
formats (JSON, YAML, pickle), support for user-defined templates
(via the optional Jinja2 dependency), and integration with MultiQC.
8. The ability to merge overlapping reads (this is experimental and
the functionality is limited).
9. The ability to write the summary report and log messages to
separate files.
10. The ability to read SAM/BAM files and read/write interleaved
FASTQ files.
11. Direct trimming of reads from an SRA accession.
12. A progress bar, and other minor usability enhancements.
Description-md5:
Homepage: https://github.com/jdidion/atropos
Section: science
Priority: optional
Filename: pool/main/a/atropos/atropos_1.1.32+dfsg-1_amd64.deb