How to Install and Uninstall chip-seq Package on Kali Linux

Last updated: May 20,2024

1. Install "chip-seq" package

This is a short guide on how to install chip-seq on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                chip-seq
            
                    
    
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2. Uninstall "chip-seq" package

Please follow the instructions below to uninstall chip-seq on Kali Linux:


    
        
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                sudo apt remove
            
                        
                chip-seq
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the chip-seq package on Kali Linux

Package: chip-seq
Version: 1.5.5-3
Installed-Size: 496
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libc6 (>= 2.14), chip-seq-data, libmath-round-perl
Size: 101108
SHA256: b6afd5284ffba50b5fa6f07f3af3f5baf470031f00ceacbe0f57cc302316abbf
SHA1: 7d9af769ebe526287265beb7949706b1efb7b1d1
MD5sum: 20bf46940d57c43cac17016413efe238
Description: tools performing common ChIP-Seq data analysis tasks
The ChIP-Seq software provides a set of tools performing common genome-
wide ChIP- seq analysis tasks, including positional correlation
analysis, peak detection, and genome partitioning into signal-rich and
signal-poor regions. These tools exist as stand-alone C programs and
perform the following tasks:
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1. Positional correlation analysis and generation of an aggregation
plot (AP) (chipcor),
2. Extraction of specific genome annotation features around reference
anchor points (chipextract),
3. Read centering or shifting (chipcenter),
4. Narrow peak caller using a fixed width peak size (chippeak),
5. Broad peak caller used for large regions of enrichment (chippart),
6. Feature selection tool based on a read count threshold (chipscore).
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Because the ChIP-Seq tools are primarily optimized for speed, they use
their own compact format for ChIP-seq data representation called SGA
(Simplified Genome Annotation). SGA is a line-oriented, tab-delimited
plain text format.
Description-md5:
Homepage: https://ccg.epfl.ch//chipseq
Section: science
Priority: optional
Filename: pool/main/c/chip-seq/chip-seq_1.5.5-3_amd64.deb