How to Install and Uninstall chromhmm Package on Kali Linux

Last updated: November 22,2024

1. Install "chromhmm" package

Please follow the guidelines below to install chromhmm on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                chromhmm
            
                    
    
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2. Uninstall "chromhmm" package

This guide covers the steps necessary to uninstall chromhmm on Kali Linux:


    
        
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                sudo apt remove
            
                        
                chromhmm
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the chromhmm package on Kali Linux

Package: chromhmm
Version: 1.25+dfsg-1
Installed-Size: 209
Maintainer: Debian Med Packaging Team
Architecture: all
Depends: default-jre | java7-runtime | java8-runtime | java9-runtime | java10-runtime | java11-runtime, libbatik-java, libhtsjdk-java, libjheatchart-java
Size: 197920
SHA256: a33bdea9f5ab4e00357856317a25dc7773c94d2b4c6c11748d9d33ed1b86e345
SHA1: 9eb1d7dbd3f75687fbadad47e72fda84fe7568b6
MD5sum: 9d2946ee8582509a0da7f4020d22aa66
Description: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states.
ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of
various histone modifications to discover de novo the major re-occuring
combinatorial and spatial patterns of marks. ChromHMM is based on a
multivariate Hidden Markov Model that explicitly models the presence or
absence of each chromatin mark. The resulting model can then be used to
systematically annotate a genome in one or more cell types. By automatically
computing state enrichments for large-scale functional and annotation datasets
ChromHMM facilitates the biological characterization of each state. ChromHMM
also produces files with genome-wide maps of chromatin state annotations that
can be directly visualized in a genome browser.
Description-md5:
Homepage: https://compbio.mit.edu/ChromHMM/
Section: science
Priority: optional
Filename: pool/main/c/chromhmm/chromhmm_1.25+dfsg-1_all.deb