How to Install and Uninstall clonalframeml Package on Kali Linux

Last updated: April 28,2024

1. Install "clonalframeml" package

This guide let you learn how to install clonalframeml on Kali Linux


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                clonalframeml
            
                    
    
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2. Uninstall "clonalframeml" package

Please follow the steps below to uninstall clonalframeml on Kali Linux:


    
        
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                sudo apt remove
            
                        
                clonalframeml
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the clonalframeml package on Kali Linux

Package: clonalframeml
Version: 1.13-1
Installed-Size: 283
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1)
Size: 106364
SHA256: 200d958cd6830ac62acfb2f8659ba23ceca244c8f59b81408e8c3f31617667b4
SHA1: 5e87bd0b44eef0d2d7f23e962cb5b36e51913505
MD5sum: fb4d9b97492b29942c2bb66ebe2b3b1e
Description: Efficient Inference of Recombination in Whole Bacterial Genomes
ClonalFrameML is a software package that performs efficient inference of
recombination in bacterial genomes. ClonalFrameML was created by Xavier
Didelot and Daniel Wilson. ClonalFrameML can be applied to any type of
aligned sequence data, but is especially aimed at analysis of whole
genome sequences. It is able to compare hundreds of whole genomes in a
matter of hours on a standard Desktop computer. There are three main
outputs from a run of ClonalFrameML: a phylogeny with branch lengths
corrected to account for recombination, an estimation of the key
parameters of the recombination process, and a genomic map of where
recombination took place for each branch of the phylogeny.
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ClonalFrameML is a maximum likelihood implementation of the Bayesian
software ClonalFrame which was previously described by Didelot and
Falush (2007). The recombination model underpinning ClonalFrameML is
exactly the same as for ClonalFrame, but this new implementation is a
lot faster, is able to deal with much larger genomic dataset, and does
not suffer from MCMC convergence issues
Description-md5:
Homepage: https://github.com/xavierdidelot/ClonalFrameML
Section: science
Priority: optional
Filename: pool/main/c/clonalframeml/clonalframeml_1.13-1_amd64.deb