How to Install and Uninstall fasta3 Package on Kali Linux

Last updated: December 23,2024

1. Install "fasta3" package

Please follow the steps below to install fasta3 on Kali Linux


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                fasta3
            
                    
    
    Copied

2. Uninstall "fasta3" package

In this section, we are going to explain the necessary steps to uninstall fasta3 on Kali Linux:


    
        
            $
        

        
            
                sudo apt remove
            
                        
                fasta3
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the fasta3 package on Kali Linux

Package: fasta3
Version: 36.3.8i.14-Nov-2020-1
Installed-Size: 6970
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libc6 (>= 2.34), python3
Recommends: r-base-core
Suggests: perl:any, libdbi-perl, libwww-perl, libjson-perl, libhtml-tableextract-perl, libxml-twig-perl, liburi-encode-perl, libdbd-mysql-perl, python3-mysqldb, ncbi-blast+, bedtools
Size: 923880
SHA256: 777c7e0683ef5680222bd2c575b931d09dfedf439c28cd3d92dbe6b52bdbb262
SHA1: 4f793bd546aac04a9f71680420b25c9e96bf7221
MD5sum: b8d86c378f81eb48297edcd26f792615
Description: tools for searching collections of biological sequences
The FASTA programs find regions of local or global similarity between
Protein or DNA sequences, either by searching Protein or DNA databases,
or by identifying local duplications within a sequence. Other
programs provide information on the statistical significance of an
alignment. Like BLAST, FASTA can be used to infer functional and
evolutionary relationships between sequences as well as help identify
members of gene families.
.
* Protein
- Protein-protein FASTA
- Protein-protein Smith-Waterman (ssearch)
- Global Protein-protein (Needleman-Wunsch) (ggsearch)
- Global/Local protein-protein (glsearch)
- Protein-protein with unordered peptides (fasts)
- Protein-protein with mixed peptide sequences (fastf)
.
* Nucleotide
- Nucleotide-Nucleotide (DNA/RNA fasta)
- Ordered Nucleotides vs Nucleotide (fastm)
- Un-ordered Nucleotides vs Nucleotide (fasts)
.
* Translated
- Translated DNA (with frameshifts, e.g. ESTs)
vs Proteins (fastx/fasty)
- Protein vs Translated DNA (with frameshifts)
(tfastx/tfasty)
- Peptides vs Translated DNA (tfasts)
.
* Statistical Significance
- Protein vs Protein shuffle (prss)
- DNA vs DNA shuffle (prss)
- Translated DNA vs Protein shuffle (prfx)
.
* Local Duplications
- Local Protein alignments (lalign)
- Plot Protein alignment "dot-plot" (plalign)
- Local DNA alignments (lalign)
- Plot DNA alignment "dot-plot" (plalign)
.
This software is often used via a web service at the
EBI with readily indexed reference databases at
http://www.ebi.ac.uk/Tools/fasta/.
Description-md5:
Homepage: https://fasta.bioch.virginia.edu
Section: science
Priority: optional
Filename: pool/main/f/fasta3/fasta3_36.3.8i.14-Nov-2020-1_amd64.deb