How to Install and Uninstall gff2aplot Package on Kali Linux

Last updated: May 18,2024

1. Install "gff2aplot" package

This tutorial shows how to install gff2aplot on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                gff2aplot
            
                    
    
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2. Uninstall "gff2aplot" package

Please follow the guidance below to uninstall gff2aplot on Kali Linux:


    
        
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                sudo apt remove
            
                        
                gff2aplot
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the gff2aplot package on Kali Linux

Package: gff2aplot
Version: 2.0-15
Installed-Size: 1447
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libc6 (>= 2.34), perl:any
Recommends: graphicsmagick | imagemagick, ghostscript
Suggests: postscript-viewer, gff2ps
Size: 244168
SHA256: d0f31c2e1a0b67aa121e108f8f3e1f10be28e53e5e584b8b60f8343ed4073fc6
SHA1: 49b4aa06eabf028f0d111593ec46719c8bff178b
MD5sum: da7f0ae9b3f9691fa3906d46077b8080
Description: pair-wise alignment-plots for genomic sequences in PostScript
A program to visualize the alignment of two genomic sequences together with
their annotations. From GFF-format input files it produces PostScript figures
for that alignment.
The following menu lists many features of gff2aplot:
* Comprehensive alignment plots for any GFF-feature. Attributes are defined
separately so you can modify only whatsoever attributes for a given file or
share same customization across different data-sets.
* All parameters are set by default within the program, but it can be also
fully configured via gff2ps-like flexible customization files. Program can
handle several of such files, summarizing all the settings before producing
the corresponding figure. Moreover, all customization parameters can be set
via command-line switches, which allows users to play with those parameters
before adding any to a customization file.
* Source order is taken from input files, if you swap file order you can
visualize alignment and its annotation with the new input arrangement.
* All alignment scores can be visualized in a PiP box below gff2aplot area,
using grey-color scale, user-defined color scale or score-dependent
gradients.
* Scalable fonts, which can also be chosen among the basic PostScript default
fonts. Feature and group labels can be rotated to improve readability in
both annotation axes.
* The program is still defined as a Unix filter so it can handle data from
files, redirections and pipes, writing output to standard-output and
warnings to standard error.
* gff2aplot is able to manage many physical page formats (from A0 to A10, and
more -see available page sizes in its manual-), including user-defined ones.
This allows, for instance, the generation of poster size genomic maps, or
the use of a continuous-paper supporting plotting device, either in portrait
or landscape.
* You can draw different alignments on same alignment plot and distinguish
them by using different colors for each.
* Shape dictionary has been expanded, so that further feature shapes are now
available (see manual).
* Annotation projections through alignment plots (so called ribbons) emulate
transparencies via complementary color fill patterns. This feature allows
one to show color pseudo-blending when horizontal and vertical ribbons
overlap.
Description-md5:
Homepage: https://genome.crg.es/software/gfftools/GFF2APLOT.html
Tag: devel::lang:perl, devel::library, field::biology,
field::biology:bioinformatics, implemented-in::c, implemented-in::perl,
interface::commandline, interface::shell, role::devel-lib,
role::program, scope::utility, use::converting, use::viewing,
works-with-format::plaintext, works-with-format::postscript,
works-with::TODO, works-with::image, works-with::image:vector,
works-with::text
Section: science
Priority: optional
Filename: pool/main/g/gff2aplot/gff2aplot_2.0-15_amd64.deb