How to Install and Uninstall metaphlan2 Package on Kali Linux

Last updated: December 23,2024

Deprecated! Installation of this package may no longer be supported.

1. Install "metaphlan2" package

Please follow the step by step instructions below to install metaphlan2 on Kali Linux


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                metaphlan2
            
                    
    
    Copied

2. Uninstall "metaphlan2" package

Please follow the guidance below to uninstall metaphlan2 on Kali Linux:


    
        
            $
        

        
            
                sudo apt remove
            
                        
                metaphlan2
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the metaphlan2 package on Kali Linux

Package: metaphlan2
Version: 3.1.0-1
Installed-Size: 2426
Maintainer: Debian Med Packaging Team
Architecture: all
Depends: python3-biom-format, python3-biopython, python3-dendropy, python3-h5py-serial, python3-numpy, python3-pandas, python3-pysam, python3-requests, python3-scipy, python3:any, metaphlan2-data, python3-msgpack, bowtie2
Size: 706688
SHA256: bb9ec2a5c83b1ab8857e352adbf2e806ccdc302d12a4ae45c96326453c39463f
SHA1: c0635026a6e05a097284c79c11ec6786d6dbb827
MD5sum: 13c777a578fb9d16deb1f9b290238c69
Description: Metagenomic Phylogenetic Analysis
MetaPhlAn is a computational tool for profiling the composition of
microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from
metagenomic shotgun sequencing data with species level resolution. From
version 2.0, MetaPhlAn is also able to identify specific strains (in the
not-so-frequent cases in which the sample contains a previously
sequenced strains) and to track strains across samples for all species.
.
MetaPhlAn 2.0 relies on ~1M unique clade-specific marker genes (the
marker information file can be found at
usr/share/metaphlan2/utils/markers_info.txt.bz2) identified from
~17,000 reference genomes (~13,500 bacterial and archaeal, ~3,500 viral,
and ~110 eukaryotic), allowing:
.
* unambiguous taxonomic assignments;
* accurate estimation of organismal relative abundance;
* species-level resolution for bacteria, archaea, eukaryotes and
viruses;
* strain identification and tracking
* orders of magnitude speedups compared to existing methods.
* metagenomic strain-level population genomics
Description-md5: 3b2f7f0abf7727c8176639b50ed2f548
Homepage: https://bitbucket.org/biobakery/metaphlan2
Section: science
Priority: optional
Filename: pool/main/m/metaphlan2/metaphlan2_3.1.0-1_all.deb