How to Install and Uninstall ncbi-epcr Package on Kali Linux

Last updated: December 23,2024

1. Install "ncbi-epcr" package

This guide let you learn how to install ncbi-epcr on Kali Linux


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                ncbi-epcr
            
                    
    
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2. Uninstall "ncbi-epcr" package

Please follow the steps below to uninstall ncbi-epcr on Kali Linux:


    
        
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                sudo apt remove
            
                        
                ncbi-epcr
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the ncbi-epcr package on Kali Linux

Package: ncbi-epcr
Source: epcr
Version: 2.3.12-1-9
Installed-Size: 496
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2)
Suggests: bioperl
Size: 168364
SHA256: 51d56e4d9c4bd06136448d96d7e9be97a411ba641e685e65f5cd7ed1b4dbe7d6
SHA1: 52022e252c7c00d6ca652ffc9c4c0d97c640720d
MD5sum: 9e8e1fd0aa6b24e18fd811cbb7dc7812
Description: Tool to test a DNA sequence for the presence of sequence tagged sites
Electronic PCR (e-PCR) is computational procedure that is used to identify
sequence tagged sites(STSs), within DNA sequences. e-PCR looks for potential
STSs in DNA sequences by searching for subsequences that closely match the
PCR primers and have the correct order, orientation, and spacing that could
represent the PCR primers used to generate known STSs.
.
The new version of e-PCR implements a fuzzy matching strategy. To reduce
likelihood that a true STS will be missed due to mismatches, multiple
discontiguous words may be used instead of a single exact word. Each of this
word has groups of significant positions separated by 'wildcard' positions
that are not required to match. In addition, it is also possible to allow
gaps in the primer alignments.
.
The main motivation for implementing reverse searching (called Reverse e-PCR)
was to make it feasible to search the human genome sequence and other large
genomes. The new version of e-PCR provides a search mode using a query
sequence against a sequence database.
.
This program is retired upstream and it is suggested to use Primer-Blast
https://www.ncbi.nlm.nih.gov/tools/primer-blast/
instead.
Description-md5:
Homepage: https://www.ncbi.nlm.nih.gov/tools/epcr/
Tag: field::biology, field::biology:bioinformatics, implemented-in::c++,
interface::commandline, role::program, scope::utility, use::checking,
use::searching, works-with-format::plaintext, works-with::TODO
Section: science
Priority: optional
Filename: pool/main/e/epcr/ncbi-epcr_2.3.12-1-9_amd64.deb