How to Install and Uninstall packmol Package on Kali Linux

Last updated: November 07,2024

1. Install "packmol" package

Please follow the steps below to install packmol on Kali Linux


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                packmol
            
                    
    
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2. Uninstall "packmol" package

Please follow the instructions below to uninstall packmol on Kali Linux:


    
        
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                sudo apt remove
            
                        
                packmol
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the packmol package on Kali Linux

Package: packmol
Version: 1:20.14.3-1
Installed-Size: 426
Maintainer: Debichem Team
Architecture: amd64
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libgfortran5 (>= 10)
Recommends: tcl
Size: 115128
SHA256: ee0bfb94bc519135e37c3ad0f8d0447080708b5fe9327d0a6479946c5898ad26
SHA1: d58dc06a1eaa8f6bf7db7f678d512ca6a2669c8d
MD5sum: c1de84d2034385e87168fbd408ad5059
Description: Initial configurations for Molecular Dynamics Simulations
Initial configurations for Molecular Dynamics Simulations by packing
optimization.
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Packmol creates an initial point for molecular dynamics simulations by
packing molecules in defined regions of space. The packing guarantees
that short range repulsive interactions do not disrupt the
simulations.
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The great variety of types of spatial constraints that can be
attributed to the molecules, or atoms within the molecules, makes it
easy to create ordered systems, such as lamellar, spherical or tubular
lipid layers.
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The user must provide only the coordinates of one molecule of each
type, the number of molecules of each type and the spatial constraints
that each type of molecule must satisfy.
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The package is compatible with input files of PDB, TINKER, XYZ and
MOLDY formats.
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See http://m3g.iqm.unicamp.br/packmol for more information.
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References
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Please always cite one of the following references in publications for
which Packmol was useful:
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L Martinez, R Andrade, EG Birgin, JM Martinez, Packmol: A package for
building initial configurations for molecular dynamics simulations.
Journal of Computational Chemistry, 30, 2157-2164, 2009.
(http://www3.interscience.wiley.com/journal/122210103/abstract)
.
JM Martinez, L Martinez, Packing optimization for the automated
generation of complex system's initial configurations for molecular
dynamics and docking. Journal of Computational Chemistry, 24, 819-825,
2003. (http://www3.interscience.wiley.com/journal/104086246/abstract)
Description-md5:
Homepage: http://m3g.iqm.unicamp.br/packmol/
Section: science
Priority: optional
Filename: pool/main/p/packmol/packmol_20.14.3-1_amd64.deb