How to Install and Uninstall paleomix Package on Kali Linux

Last updated: May 05,2024

1. Install "paleomix" package

Please follow the steps below to install paleomix on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                paleomix
            
                    
    
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2. Uninstall "paleomix" package

This guide covers the steps necessary to uninstall paleomix on Kali Linux:


    
        
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                sudo apt remove
            
                        
                paleomix
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the paleomix package on Kali Linux

Package: paleomix
Version: 1.3.8-1
Installed-Size: 2006
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: python3-coloredlogs, python3-configargparse, python3-pysam, python3-ruamel.yaml, python3-setproctitle, python3:any, adapterremoval, bedtools, bowtie2, bwa, bcftools, examl, mafft, mapdamage, phylip, picard-tools, r-base-core, radiant, raxml, samtools
Size: 983864
SHA256: 1962b954a2ab038bd6339542265e1f9720eba2aeaded3066749bda681a7424ba
SHA1: 76a9556847a89730b5f6f570cc06488ebb05ca1d
MD5sum: 5f5fdaf6a3957756e162048d7dfa0362
Description: pipelines and tools for the processing of ancient and modern HTS data
The PALEOMIX pipelines are a set of pipelines and tools designed to aid
the rapid processing of High-Throughput Sequencing (HTS) data: The BAM
pipeline processes de-multiplexed reads from one or more samples,
through sequence processing and alignment, to generate BAM alignment
files useful in downstream analyses; the Phylogenetic pipeline carries
out genotyping and phylogenetic inference on BAM alignment files, either
produced using the BAM pipeline or generated elsewhere; and the Zonkey
pipeline carries out a suite of analyses on low coverage equine
alignments, in order to detect the presence of F1-hybrids in
archaeological assemblages. In addition, PALEOMIX aids in metagenomic
analysis of the extracts.
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The pipelines have been designed with ancient DNA (aDNA) in mind, and
includes several features especially useful for the analyses of ancient
samples, but can all be for the processing of modern samples, in order
to ensure consistent data processing.
Description-md5:
Homepage: https://geogenetics.ku.dk/publications/paleomix
Section: science
Priority: optional
Filename: pool/main/p/paleomix/paleomix_1.3.8-1_amd64.deb