How to Install and Uninstall pbdagcon Package on Kali Linux

Last updated: May 12,2024

1. Install "pbdagcon" package

Please follow the guidance below to install pbdagcon on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                pbdagcon
            
                    
    
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2. Uninstall "pbdagcon" package

Please follow the steps below to uninstall pbdagcon on Kali Linux:


    
        
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                sudo apt remove
            
                        
                pbdagcon
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the pbdagcon package on Kali Linux

Package: pbdagcon
Version: 0.3+git20180411.c14c422+dfsg-8
Installed-Size: 1294
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libblasr5.3.5 (>= 5.3.5+dfsg), libc6 (>= 2.33), libgcc-s1 (>= 3.4), libstdc++6 (>= 12), libpbseq (>= 5.3.5+dfsg-4~)
Suggests: blasr
Size: 355428
SHA256: 14cab14b7c7608dde76c39b728175e3c4acbe6f49fca9b11a3f7cb3a57704cca
SHA1: 591549395f97553a74a0f4c4d09d6a8538c9e952
MD5sum: cfe3edd0255deacca82e6203f5dee005
Description: sequence consensus using directed acyclic graphs
pbdagcon is a tool that implements DAGCon (Directed Acyclic Graph Consensus)
which is a sequence consensus algorithm based on using directed acyclic
graphs to encode multiple sequence alignment.
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It uses the alignment information from blasr to align sequence reads to a
"backbone" sequence. Based on the underlying alignment directed acyclic graph
(DAG), it will be able to use the new information from the reads to find the
discrepancies between the reads and the "backbone" sequences. A dynamic
programming process is then applied to the DAG to find the optimum sequence
of bases as the consensus. The new consensus can be used as a new backbone
sequence to iteratively improve the consensus quality.
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While the code is developed for processing PacBio(TM) raw sequence data,
the algorithm can be used for general consensus purpose. Currently, it only
takes FASTA input. For shorter read sequences, one might need to adjust the
blasr alignment parameters to get the alignment string properly.
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The code and the underlying graphical data structure have been used for some
algorithm development prototyping including phasing reads and pre-assembly.
Description-md5:
Homepage: https://github.com/PacificBiosciences/pbdagcon
Section: science
Priority: optional
Filename: pool/main/p/pbdagcon/pbdagcon_0.3+git20180411.c14c422+dfsg-8_amd64.deb