How to Install and Uninstall picard-tools Package on Kali Linux

Last updated: May 17,2024

1. Install "picard-tools" package

Learn how to install picard-tools on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                picard-tools
            
                    
    
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2. Uninstall "picard-tools" package

Please follow the step by step instructions below to uninstall picard-tools on Kali Linux:


    
        
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                sudo apt remove
            
                        
                picard-tools
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the picard-tools package on Kali Linux

Package: picard-tools
Version: 3.1.1+dfsg-1
Installed-Size: 329
Maintainer: Debian Med Packaging Team
Architecture: all
Depends: default-jre | java6-runtime, libpicard-java (= 3.1.1+dfsg-1)
Size: 311308
SHA256: 211c88ad0f5d93fefc1cc15699c9a032f1ca51069398b2261aaa4e5549c408cd
SHA1: 175b023ad86fa0aaee4ad7b148596b715f1edae8
MD5sum: 5b73101c60dc28da7c1143159566f7c5
Description: Command line tools to manipulate SAM and BAM files
SAM (Sequence Alignment/Map) format is a generic format for storing
large nucleotide sequence alignments. Picard Tools includes these
utilities to manipulate SAM and BAM files:
AddCommentsToBam FifoBuffer
AddOrReplaceReadGroups FilterSamReads
BaitDesigner FilterVcf
BamIndexStats FixMateInformation
GatherBamFiles
BedToIntervalList GatherVcfs
BuildBamIndex GenotypeConcordance
CalculateHsMetrics IlluminaBasecallsToFastq
CalculateReadGroupChecksum IlluminaBasecallsToSam
CheckIlluminaDirectory LiftOverIntervalList
CheckTerminatorBlock LiftoverVcf
CleanSam MakeSitesOnlyVcf
CollectAlignmentSummaryMetrics MarkDuplicates
CollectBaseDistributionByCycle MarkDuplicatesWithMateCigar
CollectGcBiasMetrics MarkIlluminaAdapters
CollectHiSeqXPfFailMetrics MeanQualityByCycle
CollectIlluminaBasecallingMetrics MergeBamAlignment
CollectIlluminaLaneMetrics MergeSamFiles
CollectInsertSizeMetrics MergeVcfs
CollectJumpingLibraryMetrics NormalizeFasta
CollectMultipleMetrics PositionBasedDownsampleSam
CollectOxoGMetrics QualityScoreDistribution
CollectQualityYieldMetrics RenameSampleInVcf
CollectRawWgsMetrics ReorderSam
CollectRnaSeqMetrics ReplaceSamHeader
CollectRrbsMetrics RevertOriginalBaseQualitiesAndAddMateCigar
CollectSequencingArtifactMetrics RevertSam
CollectTargetedPcrMetrics SamFormatConverter
CollectVariantCallingMetrics SamToFastq
CollectWgsMetrics ScatterIntervalsByNs
CompareMetrics SortSam
CompareSAMs SortVcf
ConvertSequencingArtifactToOxoG SplitSamByLibrary
CreateSequenceDictionary SplitVcfs
DownsampleSam UpdateVcfSequenceDictionary
EstimateLibraryComplexity ValidateSamFile
ExtractIlluminaBarcodes VcfFormatConverter
ExtractSequences VcfToIntervalList
FastqToSam ViewSam
Description-md5:
Homepage: https://broadinstitute.github.io/picard/
Section: science
Priority: optional
Filename: pool/main/p/picard-tools/picard-tools_3.1.1+dfsg-1_all.deb