How to Install and Uninstall pilon Package on Kali Linux

Last updated: November 26,2024

1. Install "pilon" package

Please follow the step by step instructions below to install pilon on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                pilon
            
                    
    
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2. Uninstall "pilon" package

Please follow the guidance below to uninstall pilon on Kali Linux:


    
        
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                sudo apt remove
            
                        
                pilon
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the pilon package on Kali Linux

Package: pilon
Version: 1.24-3
Installed-Size: 613
Maintainer: Debian Med Packaging Team
Architecture: all
Replaces: pilon-non-free
Depends: default-jre, java-wrappers, libhtsjdk-java, libcommons-lang-java, scala-library
Conflicts: pilon-non-free
Size: 497128
SHA256: 7877a99427b17d2e84de4a4cf55799b1cedd05effb87384e1afd012e26287bde
SHA1: 535d0ea8cd4cfb7a8f9b4f85c9d3606aaab7d6ef
MD5sum: a2dd655b91ca33183fd88fb9c8d3ab21
Description: automated genome assembly improvement and variant detection tool
Pilon is a software tool which can be used to:
* Automatically improve draft assemblies
* Find variation among strains, including large event detection
Pilon requires as input a FASTA file of the genome along with one or more
BAM files of reads aligned to the input FASTA file. Pilon uses read
alignment analysis to identify inconsistencies between the input genome and
the evidence in the reads. It then attempts to make improvements to the
input genome, including:
* Single base differences
* Small indels
* Larger indel or block substitution events
* Gap filling
* Identification of local misassemblies, including optional opening
of new gaps
Description-md5:
Homepage: https://github.com/broadinstitute/pilon/wiki
Section: science
Priority: optional
Filename: pool/main/p/pilon/pilon_1.24-3_all.deb