How to Install and Uninstall prodigal Package on Kali Linux

Last updated: December 22,2024

1. Install "prodigal" package

This is a short guide on how to install prodigal on Kali Linux


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                prodigal
            
                    
    
    Copied

2. Uninstall "prodigal" package

In this section, we are going to explain the necessary steps to uninstall prodigal on Kali Linux:


    
        
            $
        

        
            
                sudo apt remove
            
                        
                prodigal
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the prodigal package on Kali Linux

Package: prodigal
Version: 1:2.6.3-6
Installed-Size: 12001
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libc6 (>= 2.34)
Size: 507752
SHA256: 45c747d902a81bbdba84ffcd54a090c82f1ba60e1b4654d697b0c58be3a2239b
SHA1: 620634e7a64aac0f9f50a6aacbfe2ef628d663e0
MD5sum: 59372028e158b316bb4424a33cbb8592
Description: Microbial (bacterial and archaeal) gene finding program
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a
microbial (bacterial and archaeal) gene finding program developed at
Oak Ridge National Laboratory and the University of Tennessee.
Key features of Prodigal include:
.
Speed: Prodigal is an extremely fast gene recognition tool
(written in very vanilla C). It can analyze an entire microbial genome
in 30 seconds or less.
.
Accuracy: Prodigal is a highly accurate gene finder.
It correctly locates the 3' end of every gene in the experimentally verified
Ecogene data set (except those containing introns).
It possesses a very sophisticated ribosomal binding site scoring system that
enables it to locate the translation initiation site with great accuracy
(96% of the 5' ends in the Ecogene data set are located correctly).
.
Specificity: Prodigal's false positive rate compares favorably with other
gene identification programs, and usually falls under 5%.
.
GC-Content Indifferent: Prodigal performs well even in high GC genomes,
with over a 90% perfect match (5'+3') to the Pseudomonas aeruginosa curated
annotations.
.
Metagenomic Version: Prodigal can run in metagenomic mode and analyze
sequences even when the organism is unknown.
.
Ease of Use: Prodigal can be run in one step on a single genomic sequence
or on a draft genome containing many sequences. It does not need to be
supplied with any knowledge of the organism, as it learns all the properties
it needs to on its own.
Description-md5:
Homepage: http://prodigal.ornl.gov/
Section: science
Priority: optional
Filename: pool/main/p/prodigal/prodigal_2.6.3-6_amd64.deb