How to Install and Uninstall pyfastx Package on Kali Linux

Last updated: November 26,2024

1. Install "pyfastx" package

Please follow the steps below to install pyfastx on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                pyfastx
            
                    
    
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2. Uninstall "pyfastx" package

Please follow the step by step instructions below to uninstall pyfastx on Kali Linux:


    
        
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                sudo apt remove
            
                        
                pyfastx
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the pyfastx package on Kali Linux

Package: pyfastx
Version: 2.0.2-2
Installed-Size: 169
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: python3, python3-pyfastx
Size: 127376
SHA256: 59179da0e8c5a2123c3721b655d453fed3226b0d5d7b24a81adde822092c6d18
SHA1: eb5004c99b5451bdf949803d3a41a518124b46aa
MD5sum: 7373d500ec9b2256b5493886cd7d0775
Description: fast random access to sequences from FASTA/Q file - command
The pyfastx is a lightweight Python C extension that enables users to randomly
access to sequences from plain and gzipped FASTA/Q files. This module aims to
provide simple APIs for users to extract sequence from FASTA and reads from
FASTQ by identifier and index number. The pyfastx will build indexes stored in
a sqlite3 database file for random access to avoid consuming excessive amount
of memory. In addition, the pyfastx can parse standard (sequence is spread
into multiple lines with same length) and nonstandard (sequence is spread into
one or more lines with different length) FASTA format.
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It features:
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* a single file for the Python extension;
* lightweight, memory efficient FASTA/Q file parsing;
* fast random access to sequences from gzipped FASTA/Q file;
* sequences reading from FASTA file line by line;
* N50 and L50 calculation of sequences in FASTA file;
* GC content and nucleotides composition calculation;
* reverse, complement and antisense sequences extraction;
* excellent compatibility: support for parsing nonstandard FASTA file;
* support for FASTQ quality score conversion;
* a command line interface for splitting FASTA/Q file.
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This package provides the command line interface.
Description-md5:
Homepage: https://github.com/lmdu/pyfastx
Section: science
Priority: optional
Filename: pool/main/p/pyfastx/pyfastx_2.0.2-2_amd64.deb