How to Install and Uninstall python3-pyfastx Package on Kali Linux

Last updated: November 22,2024

1. Install "python3-pyfastx" package

Please follow the step by step instructions below to install python3-pyfastx on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                python3-pyfastx
            
                    
    
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2. Uninstall "python3-pyfastx" package

Here is a brief guide to show you how to uninstall python3-pyfastx on Kali Linux:


    
        
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                sudo apt remove
            
                        
                python3-pyfastx
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the python3-pyfastx package on Kali Linux

Package: python3-pyfastx
Source: pyfastx
Version: 2.0.2-2
Installed-Size: 305
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libc6 (>= 2.28), libsqlite3-0 (>= 3.5.9), python3, python3-pyfaidx
Size: 68092
SHA256: ae9d60cd934bf0d400da010b4c304d94e0820df763964306467ce295a55eef55
SHA1: 1edbdb275b112d91196ff45c4cf96bbaf35b0d93
MD5sum: d51d7daee86d2e7047aefb7252292dff
Description: fast random access to sequences from FASTA/Q file - python3 module
The pyfastx is a lightweight Python C extension that enables users to randomly
access to sequences from plain and gzipped FASTA/Q files. This module aims to
provide simple APIs for users to extract sequence from FASTA and reads from
FASTQ by identifier and index number. The pyfastx will build indexes stored in
a sqlite3 database file for random access to avoid consuming excessive amount
of memory. In addition, the pyfastx can parse standard (sequence is spread
into multiple lines with same length) and nonstandard (sequence is spread into
one or more lines with different length) FASTA format.
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It features:
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* a single file for the Python extension;
* lightweight, memory efficient FASTA/Q file parsing;
* fast random access to sequences from gzipped FASTA/Q file;
* sequences reading from FASTA file line by line;
* N50 and L50 calculation of sequences in FASTA file;
* GC content and nucleotides composition calculation;
* reverse, complement and antisense sequences extraction;
* excellent compatibility: support for parsing nonstandard FASTA file;
* support for FASTQ quality score conversion;
* a command line interface for splitting FASTA/Q file.
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This package provides the python3 module.
Description-md5:
Homepage: https://github.com/lmdu/pyfastx
Section: python
Priority: optional
Filename: pool/main/p/pyfastx/python3-pyfastx_2.0.2-2_amd64.deb