How to Install and Uninstall python3-treetime Package on Kali Linux

Last updated: December 28,2024

1. Install "python3-treetime" package

Here is a brief guide to show you how to install python3-treetime on Kali Linux


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                python3-treetime
            
                    
    
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2. Uninstall "python3-treetime" package

Please follow the guidance below to uninstall python3-treetime on Kali Linux:


    
        
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                sudo apt remove
            
                        
                python3-treetime
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the python3-treetime package on Kali Linux

Package: python3-treetime
Source: python-treetime
Version: 0.11.1-1
Installed-Size: 1746
Maintainer: Debian Med Packaging Team
Architecture: all
Depends: python3-biopython, python3-matplotlib | python3-supported-max (<< 3.6), python3-numpy, python3-pandas, python3-scipy, python3:any
Recommends: python3-matplotlib
Size: 930528
SHA256: edcb481660d2c3d1fb603e6528b80577377ba5383b9be9811e855cd70cae321d
SHA1: 93e36a7edc488f2fd08361ec0622205a14bbe3f5
MD5sum: 489273debabd56c324eb24b68b70539f
Description: inference of time stamped phylogenies and ancestral reconstruction (Python 3)
TreeTime provides routines for ancestral sequence reconstruction and the
maximum likelihoo inference of molecular-clock phylogenies, i.e., a tree
where all branches are scaled such that the locations of terminal nodes
correspond to their sampling times and internal nodes are placed at the
most likely time of divergence.
.
TreeTime aims at striking a compromise between sophisticated
probabilistic models of evolution and fast heuristics. It implements GTR
models of ancestral inference and branch length optimization, but takes
the tree topology as given. To optimize the likelihood of time-scaled
phylogenies, treetime uses an iterative approach that first infers
ancestral sequences given the branch length of the tree, then optimizes
the positions of unconstraine d nodes on the time axis, and then repeats
this cycle. The only topology optimization are (optional) resolution of
polytomies in a way that is most (approximately) consistent with the
sampling time constraints on the tree. The package is designed to be
used as a stand-alone tool or as a library used in larger phylogenetic
analysis workflows.
.
Features
* ancestral sequence reconstruction (marginal and joint maximum
likelihood)
* molecular clock tree inference (marginal and joint maximum
likelihood)
* inference of GTR models
* rerooting to obtain best root-to-tip regression
* auto-correlated relaxed molecular clock (with normal prior)
.
This package provides the Python 3 module.
Description-md5:
Homepage: https://github.com/neherlab/treetime
Section: python
Priority: optional
Filename: pool/main/p/python-treetime/python3-treetime_0.11.1-1_all.deb