How to Install and Uninstall r-bioc-dada2 Package on Kali Linux

Last updated: May 20,2024

1. Install "r-bioc-dada2" package

This tutorial shows how to install r-bioc-dada2 on Kali Linux

$ sudo apt update $ sudo apt install r-bioc-dada2

2. Uninstall "r-bioc-dada2" package

Please follow the guidelines below to uninstall r-bioc-dada2 on Kali Linux:

$ sudo apt remove r-bioc-dada2 $ sudo apt autoclean && sudo apt autoremove

3. Information about the r-bioc-dada2 package on Kali Linux

Package: r-bioc-dada2
Version: 1.30.0+dfsg-1
Installed-Size: 3126
Maintainer: Debian R Packages Maintainers
Architecture: amd64
Depends: r-api-4.0, r-api-bioc-3.18, r-cran-rcpp (>= 0.12.0), r-bioc-biostrings (>= 2.42.1), r-cran-ggplot2 (>= 2.1.0), r-cran-reshape2 (>= 1.4.1), r-bioc-shortread (>= 1.32.0), r-cran-rcppparallel (>= 4.3.0), r-bioc-iranges (>= 2.6.0), r-bioc-xvector (>= 0.16.0), r-bioc-biocgenerics (>= 0.22.0), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1), libtbb12 (>= 2021.4.0)
Suggests: r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown
Size: 2804580
SHA256: d2828c69666909ec1bb6275b2ba912b3350915327890d28cc6cb0041cab413cd
SHA1: 04550857085aa81e410adfd781746efa0cf20cd0
MD5sum: d1fec625d54670e5c2ae774d7972e46b
Description: sample inference from amplicon sequencing data
The dada2 package contributes to software workflows to interpret
sequencing data from microbiota - the relative abundance of
bacterial and/or yeast, typically measured in the gut.
It infers exact amplicon sequence
variants (ASVs) from high-throughput amplicon sequencing data,
replacing the coarser and less accurate OTU clustering approach.
The dada2 pipeline takes as input demultiplexed fastq files, and
outputs the sequence variants and their sample-wise abundances
after removing substitution and chimera errors. Taxonomic
classification is available via a native implementation of the RDP
naive Bayesian classifier, and species-level assignment to 16S
rRNA gene fragments by exact matching.
Description-md5:
Homepage: https://bioconductor.org/packages/dada2/
Section: gnu-r
Priority: optional
Filename: pool/main/r/r-bioc-dada2/r-bioc-dada2_1.30.0+dfsg-1_amd64.deb