How to Install and Uninstall reapr Package on Kali Linux

Last updated: December 23,2024

1. Install "reapr" package

Please follow the guidelines below to install reapr on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                reapr
            
                    
    
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2. Uninstall "reapr" package

Please follow the guidance below to uninstall reapr on Kali Linux:


    
        
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                sudo apt remove
            
                        
                reapr
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the reapr package on Kali Linux

Package: reapr
Source: reapr (1.0.18+dfsg-5)
Version: 1.0.18+dfsg-5+b1
Installed-Size: 1058
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libbamtools2.5.2 (>= 2.5.2+dfsg), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 11), libtabixpp0 (>= 1.0.0), samtools (>= 1.3), bamtools, smalt, r-base, snpomatic, tabix, libfile-copy-link-perl
Size: 208736
SHA256: a1a215406b0e8df21f50bd0a224931c873006f56139aabb8c7ed98579c001f51
SHA1: a6f32c0d6f774cc4a8be1379da1d74c411717cbd
MD5sum: a3f10d1e05efa12f7bf4d7994583da3b
Description: universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly using mapped
paired end reads, without the use of a reference genome for comparison. It can
be used in any stage of an assembly pipeline to automatically break incorrect
scaffolds and flag other errors in an assembly for manual inspection. It
reports mis-assemblies and other warnings, and produces a new broken assembly
based on the error calls.
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The software requires as input an assembly in FASTA format and paired reads
mapped to the assembly in a BAM file. Mapping information such as the fragment
coverage and insert size distribution is analysed to locate mis-assemblies.
REAPR works best using mapped read pairs from a large insert library (at least
1000bp). Additionally, if a short insert Illumina library is also available,
REAPR can combine this with the large insert library in order to score each
base of the assembly.
Description-md5:
Homepage: https://www.sanger.ac.uk/science/tools/reapr
Tag: biology::nucleic-acids, field::biology, field::biology:bioinformatics,
implemented-in::c++, interface::commandline, role::program,
works-with::biological-sequence
Section: science
Priority: optional
Filename: pool/main/r/reapr/reapr_1.0.18+dfsg-5+b1_amd64.deb