How to Install and Uninstall rockhopper Package on Kali Linux

Last updated: May 19,2024

1. Install "rockhopper" package

This tutorial shows how to install rockhopper on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                rockhopper
            
                    
    
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2. Uninstall "rockhopper" package

This guide covers the steps necessary to uninstall rockhopper on Kali Linux:


    
        
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                sudo apt remove
            
                        
                rockhopper
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the rockhopper package on Kali Linux

Package: rockhopper
Version: 2.0.3+dfsg2-4
Installed-Size: 653
Maintainer: Debian Med Packaging Team
Architecture: all
Depends: igv, default-jre
Size: 599312
SHA256: 367904368ac8e181cbde6cc27a1d3e28d8765ab4c0e83294a91a387674e51319
SHA1: f0b6f50d1475b0f8ec90cc88931c074f5deb5729
MD5sum: 8f6144c0365be3b2cc1c4ef2e30ab002
Description: system for analyzing bacterial RNA-seq data
Rockhopper is a comprehensive and user-friendly system for
computational analysis of bacterial RNA-seq data. As input, Rockhopper
takes RNA sequencing reads output by high-throughput sequencing
technology (FASTQ, QSEQ, FASTA, SAM, or BAM files). Rockhopper supports
the following tasks:
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* Reference based transcript assembly (when one or more reference
genomes are available)
- Aligning reads to genomes
- Assembling transcripts
- Identifying transcript boundaries and novel transcripts such as
small RNAs
* De novo transcript assembly (when reference genomes are unavailable)
* Normalizing data from different experiments
* Quantifying transcript abundance
* Testing for differential gene expression
* Characterizing operon structures
* Visualizing results in a genome browser
Description-md5:
Homepage: https://cs.wellesley.edu/~btjaden/Rockhopper/
Section: science
Priority: optional
Filename: pool/main/r/rockhopper/rockhopper_2.0.3+dfsg2-4_all.deb