How to Install and Uninstall seqan-needle Package on Kali Linux

Last updated: July 03,2024

1. Install "seqan-needle" package

This guide let you learn how to install seqan-needle on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                seqan-needle
            
                    
    
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2. Uninstall "seqan-needle" package

This guide covers the steps necessary to uninstall seqan-needle on Kali Linux:


    
        
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                sudo apt remove
            
                        
                seqan-needle
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the seqan-needle package on Kali Linux

Package: seqan-needle
Version: 1.0.2+ds-2
Installed-Size: 1128
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libbz2-1.0, libc6 (>= 2.34), libgcc-s1 (>= 3.4), libgomp1 (>= 6), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4)
Size: 352828
SHA256: 359bfbb62215deb092b248268e1cf27db4255ad296f2c339d6297ee85e4ff435
SHA1: 57bcff2a557900e383c2a4c6b12998fc714ddb4e
MD5sum: 8ae75a9f340ee7137351e275d4e9a73f
Description: pre-filter for the counting of very large collections of nucleotide sequences
Needle is a tool for semi-quantitative analysis of very large collections of
nucleotide sequences.
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Needle stores its data in multiple interleaved Bloom filter, a fast and space
efficient probabilistic data structure and uses a windowing scheme (also called
minimisers) to reduce the amount of data to store. How many interleaved Bloom
filter are used is defined by the user. Each interleaved Bloom filter has a so
called expression threshold and stores minimisers with an occurrence greater
than or equal to its own expression threshold and smaller than the next biggest
expression threshold (if there is no bigger expression threshold, all greater
than or equal to the threshold are stored). These expression thresholds are
then used during the query (called estimate) to approximate the expression
values of given transcripts.
Description-md5:
Homepage: https://github.com/seqan/needle
Section: science
Priority: optional
Filename: pool/main/s/seqan-needle/seqan-needle_1.0.2+ds-2_amd64.deb