How to Install and Uninstall seqsero Package on Kali Linux

Last updated: December 23,2024

Deprecated! Installation of this package may no longer be supported.

1. Install "seqsero" package

Please follow the instructions below to install seqsero on Kali Linux


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                seqsero
            
                    
    
    Copied

2. Uninstall "seqsero" package

This guide let you learn how to uninstall seqsero on Kali Linux:


    
        
            $
        

        
            
                sudo apt remove
            
                        
                seqsero
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the seqsero package on Kali Linux

Package: seqsero
Version: 1.0.1+dfsg-6
Installed-Size: 3491
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: python3:any, python3-biopython, bwa, samtools, sra-toolkit
Suggests: ispcr
Size: 358116
SHA256: 042f2f1e7f49abb9360a13f2443acfd2318dd331cb2a7cb494fa7dcb26713ad6
SHA1: f30b48e99f29743a3f8b0e1daa1a3a15bb79be14
MD5sum: 744848c9c6bb706b8e3cb96375e6edb2
Description: Salmonella serotyping from genome sequencing data
SeqSero is a pipeline for Salmonella serotype determination from raw
sequencing reads or genome assemblies.
.
SeqSero is a novel tool for determining Salmonella serotypes using high-
throughput genome sequencing data. SeqSero is based on curated databases
of Salmonella serotype determinants (rfb gene cluster, fliC and fljB
alleles) and is predicted to determine serotype rapidly and accurately
for nearly the full spectrum of Salmonella serotypes (more than 2,300
serotypes), from both raw sequencing reads and genome assemblies. The
performance of SeqSero was evaluated by testing
1. raw reads from genomes of 308 Salmonella isolates of known serotype
2. raw reads from genomes of 3,306 Salmonella isolates sequenced and
made publicly available by GenomeTrakr, a U.S. national monitoring
network operated by the Food and Drug Administration; and
3. 354 other publicly available draft or complete Salmonella genomes.
SeqSero can help to maintain the well-established utility of Salmonella
serotyping when integrated into a platform of WGS-based pathogen
subtyping and characterization.
Description-md5:
Homepage: https://github.com/denglab/SeqSero
Section: science
Priority: optional
Filename: pool/main/s/seqsero/seqsero_1.0.1+dfsg-6_amd64.deb