How to Install and Uninstall shasta Package on Kali Linux

Last updated: November 22,2024

1. Install "shasta" package

This guide let you learn how to install shasta on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                shasta
            
                    
    
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2. Uninstall "shasta" package

Please follow the guidelines below to uninstall shasta on Kali Linux:


    
        
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                sudo apt remove
            
                        
                shasta
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the shasta package on Kali Linux

Package: shasta
Version: 0.11.1-4
Installed-Size: 2593
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libboost-chrono1.83.0 (>= 1.83.0), libboost-program-options1.83.0 (>= 1.83.0), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1), python3-shasta (= 0.11.1-4)
Size: 623276
SHA256: 6aa97aa3a3ac3715bfe19a91baf7b3f7c3717499ade2c1b4556d6a01ac02682a
SHA1: 617cb5d7515a2904b5465dd51d725a0f94e08f22
MD5sum: 7927ce6d08f25654d94f68007442e82b
Description: nanopore whole genome assembly (binaries and scripts)
De novo assembly from Oxford Nanopore reads. The goal of the Shasta long
read assembler is to rapidly produce accurate assembled sequence using
as input DNA reads generated by Oxford Nanopore flow cells.
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Computational methods used by the Shasta assembler include:
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* Using a run-length representation of the read sequence. This makes
the assembly process more resilient to errors in homopolymer
repeat counts, which are the most common type of errors in Oxford
Nanopore reads.
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* Using in some phases of the computation a representation of the read
sequence based on markers, a fixed subset of short k-mers (k ≈ 10).
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Shasta assembly quality is comparable or better than assembly quality
achieved by other long read assemblers.
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This package contains the executable binaries (tools) and
accommodating scripts.
Description-md5:
Homepage: https://github.com/chanzuckerberg/shasta
Section: science
Priority: optional
Filename: pool/main/s/shasta/shasta_0.11.1-4_amd64.deb