How to Install and Uninstall sickle Package on Kali Linux

Last updated: May 17,2024

1. Install "sickle" package

Please follow the step by step instructions below to install sickle on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                sickle
            
                    
    
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2. Uninstall "sickle" package

Learn how to uninstall sickle on Kali Linux:


    
        
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                sudo apt remove
            
                        
                sickle
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the sickle package on Kali Linux

Package: sickle
Version: 1.33+git20150314.f3d6ae3-2
Installed-Size: 52
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libc6 (>= 2.14), zlib1g (>= 1:1.1.4)
Size: 18364
SHA256: 7c8931255972c6c54847dd7354985716f296c036d4cd954883fc72af40aea196
SHA1: 9d0318a9cff84ba28bde9dfa628143e0a6e9727d
MD5sum: 64d04b14fb9b7c67b6661144098d1ee2
Description: windowed adaptive trimming tool for FASTQ files using quality
Most modern sequencing technologies produce reads that have deteriorating
quality towards the 3'-end. Incorrectly called bases here negatively impact
assembles, mapping, and downstream bioinformatics analyses.
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Sickle is a tool that uses sliding windows along with quality and length
thresholds to determine when quality is sufficiently low to trim the 3'-end
of reads. It will also discard reads based upon the length threshold. It takes
the quality values and slides a window across them whose length is 0.1 times
the length of the read. If this length is less than 1, then the window is set
to be equal to the length of the read. Otherwise, the window slides along the
quality values until the average quality in the window drops below the
threshold. At that point the algorithm determines where in the window the drop
occurs and cuts both the read and quality strings there. However, if the cut
point is less than the minimum length threshold, then the read is discarded
entirely.
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Sickle supports four types of quality values: Illumina, Solexa, Phred, and
Sanger. Note that the Solexa quality setting is an approximation (the actual
conversion is a non-linear transformation). The end approximation is close.
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Sickle also supports gzipped file inputs.
Description-md5:
Homepage: https://github.com/najoshi/sickle
Section: science
Priority: optional
Filename: pool/main/s/sickle/sickle_1.33+git20150314.f3d6ae3-2_amd64.deb