How to Install and Uninstall tophat-recondition Package on Kali Linux

Last updated: December 23,2024

1. Install "tophat-recondition" package

Please follow the instructions below to install tophat-recondition on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                tophat-recondition
            
                    
    
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2. Uninstall "tophat-recondition" package

This guide let you learn how to uninstall tophat-recondition on Kali Linux:


    
        
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                sudo apt remove
            
                        
                tophat-recondition
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the tophat-recondition package on Kali Linux

Package: tophat-recondition
Version: 1.4-3
Installed-Size: 36
Maintainer: Debian Med Packaging Team
Architecture: all
Depends: python3:any
Suggests: tophat2
Size: 11112
SHA256: fb9068fc3583570e5b8e777c5734643676badb42c7ce70d7c224a8f8e487af08
SHA1: b91cebb7ddd5747c43762b9e0f41f3fc6d38cef6
MD5sum: b3dc549f0d957d3f728458d98a699aa0
Description: post-processor for TopHat unmapped reads
tophat-recondition is a post-processor for TopHat unmapped reads
(contained in unmapped.bam), making them compatible with downstream
tools (e.g., the Picard suite, samtools, GATK) (TopHat issue #17). It
also works around bugs in TopHat:
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* the "mate is unmapped" SAM flag is not set on any reads in the
unmapped.bam file (TopHat issue #3)
* the mapped mate of an unmapped read can be absent from
accepted_hits.bam, creating a mismatch between the file and the unmapped
read's flags (TopHat issue #16)
Description-md5:
Homepage: https://github.com/cbrueffer/tophat-recondition
Section: science
Priority: optional
Filename: pool/main/t/tophat-recondition/tophat-recondition_1.4-3_all.deb