How to Install and Uninstall toppic Package on Kali Linux

Last updated: May 18,2024

1. Install "toppic" package

Here is a brief guide to show you how to install toppic on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                toppic
            
                    
    
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2. Uninstall "toppic" package

Learn how to uninstall toppic on Kali Linux:


    
        
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                sudo apt remove
            
                        
                toppic
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the toppic package on Kali Linux

Package: toppic
Source: toppic (1.5.3+dfsg1-1)
Version: 1.5.3+dfsg1-1+b1
Installed-Size: 33077
Maintainer: The Debichem Group
Architecture: amd64
Depends: libboost-filesystem1.83.0 (>= 1.83.0), libboost-program-options1.83.0 (>= 1.83.0), libboost-serialization1.83.0 (>= 1.83.0), libboost-thread1.83.0 (>= 1.83.0), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libhts3 (>= 1.17), libpwizlite3 (>= 3.0.5), libqt5core5a (>= 5.15.1), libqt5gui5 (>= 5.0.2) | libqt5gui5-gles (>= 5.0.2), libqt5widgets5 (>= 5.2.0~alpha1), libstdc++6 (>= 13.1), libxerces-c3.2, toppic-common (= 1.5.3+dfsg1-1)
Size: 4735308
SHA256: 4e2c97f36f1e1947c8d6234dd75fdf868496c537f105ec7ce2a4b2a4efb92d10
SHA1: 7d9cef80b11fa860afbfbc21f0158ccb7ac4b0bf
MD5sum: 914df968b53a45d2f5467db1fb7b5aaf
Description: Top-down proteoform identification and characterization (programs)
The TopPIC Suite consists of four software tools for the interpretation
of top-down mass spectrometry data: TopFD, TopPIC, TopMG, and TopDiff.
.
-TopFD (Top-down mass spectral Feature Detection) is a software tool
for top-down spectral deconvolution and a successor to MS-Deconv. It
groups top-down spectral peaks into isotopomer envelopes and converts
isotopomer envelopes to monoisotopic neutral masses. In addition, it
extracts proteoform features from LC-MS or CE-MS data.
.
-TopPIC (Top-down mass spectrometry based Proteoform Identification
and Characterization) identifies and characterizes proteoforms at the
proteome level by searching top-down tandem mass spectra against a
protein sequence database. TopPIC is a successor to MS-Align+. It
efficiently identifies proteoforms with unexpected alterations, such
as mutations and post-translational modifications (PTMs), accurately
estimates the statistical significance of identifications, and
characterizes reported proteoforms with unknown mass shifts. It uses
several techniques, such as indexes, spectral alignment, generation
function methods, and the modification identification score (MIScore),
to increase the speed, sensitivity, and accuracy.
.
-TopMG (Top-down mass spectrometry based proteoform identification
using Mass Graphs) is a software tool for identifying ultra-modified
proteoforms by searching top-down tandem mass spectra against a
protein sequence database. It is capable of identifying proteoforms
with multiple variable PTMs and unexpected alterations, such as
histone proteoforms and phosphorylated ones. It uses mass graphs,
which efficiently represent candidate proteoforms with multiple
variable PTMs, to increase the speed and sensitivity in proteoform
identification. In addition, approximate spectrum-based filtering
methods are employed for protein sequence filtering, and a Markov
chain Monte Carlo method (TopMCMC) is used for estimating the
statistical significance of identifications.
.
-TopDiff (Top-down mass spectrometry-based identification of
Differentially expressed proteoforms) compares the abundances of
proteoforms and finds differentially expressed proteoforms by using
identifications of top-down mass spectrometry data of several protein
samples.
Description-md5:
Homepage: http://proteomics.informatics.iupui.edu/software/toppic/index.html
Tag: uitoolkit::qt
Section: science
Priority: optional
Filename: pool/main/t/toppic/toppic_1.5.3+dfsg1-1+b1_amd64.deb