How to Install and Uninstall toppic-common Package on Kali Linux

Last updated: May 19,2024

1. Install "toppic-common" package

This is a short guide on how to install toppic-common on Kali Linux


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                toppic-common
            
                    
    
    Copied

2. Uninstall "toppic-common" package

Here is a brief guide to show you how to uninstall toppic-common on Kali Linux:


    
        
            $
        

        
            
                sudo apt remove
            
                        
                toppic-common
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the toppic-common package on Kali Linux

Package: toppic-common
Source: toppic
Version: 1.5.3+dfsg1-1
Installed-Size: 56336
Maintainer: The Debichem Group
Architecture: all
Depends: fonts-font-awesome, fonts-freefont-ttf, libjs-filesaver, libjs-bootstrap4, libjs-popper.js, libjs-jquery-ui, node-jquery
Size: 18754620
SHA256: 5b9f837825031e99098adbcde59a76d7e58f60a99081a8ff6cdaac47dc2b83c7
SHA1: 0e7e9f793bc16c3a55658a28bb0d9c2ea5abcd98
MD5sum: 3295d191cf96b8e41749cb9c91950588
Description: Top-down proteoform identification and characterization (common data)
The TopPIC Suite consists of four software tools for the interpretation
of top-down mass spectrometry data: TopFD, TopPIC, TopMG, and TopDiff.
.
-TopFD (Top-down mass spectral Feature Detection) is a software tool
for top-down spectral deconvolution and a successor to MS-Deconv. It
groups top-down spectral peaks into isotopomer envelopes and converts
isotopomer envelopes to monoisotopic neutral masses. In addition, it
extracts proteoform features from LC-MS or CE-MS data.
.
-TopPIC (Top-down mass spectrometry based Proteoform Identification
and Characterization) identifies and characterizes proteoforms at the
proteome level by searching top-down tandem mass spectra against a
protein sequence database. TopPIC is a successor to MS-Align+. It
efficiently identifies proteoforms with unexpected alterations, such
as mutations and post-translational modifications (PTMs), accurately
estimates the statistical significance of identifications, and
characterizes reported proteoforms with unknown mass shifts. It uses
several techniques, such as indexes, spectral alignment, generation
function methods, and the modification identification score (MIScore),
to increase the speed, sensitivity, and accuracy.
.
-TopMG (Top-down mass spectrometry based proteoform identification
using Mass Graphs) is a software tool for identifying ultra-modified
proteoforms by searching top-down tandem mass spectra against a
protein sequence database. It is capable of identifying proteoforms
with multiple variable PTMs and unexpected alterations, such as
histone proteoforms and phosphorylated ones. It uses mass graphs,
which efficiently represent candidate proteoforms with multiple
variable PTMs, to increase the speed and sensitivity in proteoform
identification. In addition, approximate spectrum-based filtering
methods are employed for protein sequence filtering, and a Markov
chain Monte Carlo method (TopMCMC) is used for estimating the
statistical significance of identifications.
.
-TopDiff (Top-down mass spectrometry-based identification of
Differentially expressed proteoforms) compares the abundances of
proteoforms and finds differentially expressed proteoforms by using
identifications of top-down mass spectrometry data of several protein
samples.
.
This package ships common data used by the various program in the
toppic package and some documentation.
Description-md5:
Homepage: http://proteomics.informatics.iupui.edu/software/toppic/index.html
Section: science
Priority: optional
Filename: pool/main/t/toppic/toppic-common_1.5.3+dfsg1-1_all.deb