How to Install and Uninstall transdecoder Package on Kali Linux

Last updated: April 28,2024

1. Install "transdecoder" package

Please follow the step by step instructions below to install transdecoder on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                transdecoder
            
                    
    
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2. Uninstall "transdecoder" package

This guide covers the steps necessary to uninstall transdecoder on Kali Linux:


    
        
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                sudo apt remove
            
                        
                transdecoder
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the transdecoder package on Kali Linux

Package: transdecoder
Version: 5.7.1-2
Installed-Size: 666
Maintainer: Debian Med Packaging Team
Architecture: all
Depends: perl:any, liburi-perl, r-base-core, python3
Recommends: r-cran-ggplot2, r-bioc-seqlogo, hmmer
Suggests: transdecoder-doc
Size: 205292
SHA256: 5614216f0c833cd1556d9db44b376a3a3dffc8de2385575f3fc71ae4bf65ad20
SHA1: 76832a2920d0a24ea0b46823bb230e6269ca0723
MD5sum: 23ce96a3cae7906459c7ef5e1fc34116
Description: find coding regions within RNA transcript sequences
TransDecoder identifies candidate coding regions within transcript sequences,
such as those generated by de novo RNA-Seq transcript assembly using Trinity,
or constructed based on RNA-Seq alignments to the genome using Tophat and
Cufflinks.
.
TransDecoder identifies likely coding sequences based on the following
criteria:
* a minimum length open reading frame (ORF) is found in a transcript sequence
* a log-likelihood score similar to what is computed by the GeneID software
is > 0.
* the above coding score is greatest when the ORF is scored in the 1st
reading frame as compared to scores in the other 5 reading frames.
* if a candidate ORF is found fully encapsulated by the coordinates of
another candidate ORF, the longer one is reported. However, a single
transcript can report multiple ORFs (allowing for operons, chimeras, etc).
* optional the putative peptide has a match to a Pfam domain above the noise
cutoff score.
Description-md5:
Homepage: https://transdecoder.github.io/
Section: science
Priority: optional
Filename: pool/main/t/transdecoder/transdecoder_5.7.1-2_all.deb