How to Install and Uninstall transdecoder-doc Package on Kali Linux

Last updated: November 05,2024

1. Install "transdecoder-doc" package

Please follow the steps below to install transdecoder-doc on Kali Linux


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                transdecoder-doc
            
                    
    
    Copied

2. Uninstall "transdecoder-doc" package

This guide covers the steps necessary to uninstall transdecoder-doc on Kali Linux:


    
        
            $
        

        
            
                sudo apt remove
            
                        
                transdecoder-doc
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the transdecoder-doc package on Kali Linux

Package: transdecoder-doc
Source: transdecoder
Version: 5.7.1-2
Installed-Size: 27722
Maintainer: Debian Med Packaging Team
Architecture: all
Depends: perl:any
Size: 14895612
SHA256: 4b73abb73d70818e81ace6997791f9b3ff0c8c524590d2adbc85e91e78a8ccdd
SHA1: 054e82afdac028fe9e98a63880b7b7c2000fb945
MD5sum: ac6550e0ad839d3daeb74b36821e1b51
Description: find coding regions within transcripts
TransDecoder identifies candidate coding regions within transcript sequences,
such as those generated by de novo RNA-Seq transcript assembly using Trinity,
or constructed based on RNA-Seq alignments to the genome using Tophat and
Cufflinks.
.
TransDecoder identifies likely coding sequences based on the following
criteria:
* a minimum length open reading frame (ORF) is found in a transcript sequence
* a log-likelihood score similar to what is computed by the GeneID software
is > 0.
* the above coding score is greatest when the ORF is scored in the 1st
reading frame as compared to scores in the other 5 reading frames.
* if a candidate ORF is found fully encapsulated by the coordinates of
another candidate ORF, the longer one is reported. However, a single
transcript can report multiple ORFs (allowing for operons, chimeras, etc).
* optional the putative peptide has a match to a Pfam domain above the noise
cutoff score.
.
This package contains the documentation and sample data.
Description-md5:
Multi-Arch: foreign
Homepage: https://transdecoder.github.io/
Section: doc
Priority: optional
Filename: pool/main/t/transdecoder/transdecoder-doc_5.7.1-2_all.deb