How to Install and Uninstall trim-galore Package on Kali Linux

Last updated: May 20,2024

1. Install "trim-galore" package

Learn how to install trim-galore on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                trim-galore
            
                    
    
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2. Uninstall "trim-galore" package

Please follow the guidance below to uninstall trim-galore on Kali Linux:


    
        
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                sudo apt remove
            
                        
                trim-galore
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the trim-galore package on Kali Linux

Package: trim-galore
Version: 0.6.10-1
Installed-Size: 17528
Maintainer: Debian Med Packaging Team
Architecture: all
Depends: perl:any, cutadapt
Recommends: fastqc
Size: 17819680
SHA256: 76b6a5b9ceed3089b667a2636393ad49998e85b01bf10e63ca37f53105278de3
SHA1: 0c09f9962749566fea5a997929249e63e4d77eaf
MD5sum: e012e0e275f1f0018bdc6a632f7a5ba4
Description: automate quality and adapter trimming for DNA sequencing
Trim Galore! is a wrapper script to automate quality and adapter trimming
as well as quality control, with some added functionality to remove
biased methylation positions for RRBS sequence files (for directional,
non-directional (or paired-end) sequencing). It's main features are:
* For adapter trimming, Trim Galore! uses the first 13 bp of Illumina
standard adapters ('AGATCGGAAGAGC') by default (suitable for both ends
of paired-end libraries), but accepts other adapter sequence, too
* For MspI-digested RRBS libraries, Trim Galore! performs quality and
adapter trimming in two subsequent steps. This allows it to remove
2 additional bases that contain a cytosine which was artificially
introduced in the end-repair step during the library preparation
* For any kind of FastQ file other than MspI-digested RRBS, Trim
Galore! can perform single-pass adapter- and quality trimming
* The Phred quality of basecalls and the stringency for adapter removal
can be specified individually
* Trim Galore! can remove sequences if they become too short during
the trimming process. For paired-end files Trim Galore! removes entire
sequence pairs if one (or both) of the two reads became shorter than
the set length cutoff. Reads of a read-pair that are longer than a
given threshold but for which the partner read has become too short
can optionally be written out to single-end files. This ensures that
the information of a read pair is not lost entirely if only one read
is of good quality
* Trim Galore! can trim paired-end files by 1 additional bp from the 3'
end of all reads to avoid problems with invalid alignments with Bowtie 1
* Trim Galore! accepts and produces standard or gzip compressed FastQ files
* FastQC can optionally be run on the resulting output files once
trimming has completed
Description-md5:
Homepage: https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/
Section: science
Priority: optional
Filename: pool/main/t/trim-galore/trim-galore_0.6.10-1_all.deb