How to Install and Uninstall bitseq Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: May 16,2024

1. Install "bitseq" package

This tutorial shows how to install bitseq on Ubuntu 20.10 (Groovy Gorilla)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                bitseq
            
                    
    
    Copied

2. Uninstall "bitseq" package

In this section, we are going to explain the necessary steps to uninstall bitseq on Ubuntu 20.10 (Groovy Gorilla):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                bitseq
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the bitseq package on Ubuntu 20.10 (Groovy Gorilla)

Package: bitseq
Architecture: amd64
Version: 0.7.5+dfsg-5build1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1903
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.3), python3, python3-numpy
Suggests: samtools
Filename: pool/universe/b/bitseq/bitseq_0.7.5+dfsg-5build1_amd64.deb
Size: 349292
MD5sum: dbd1f19429f4e6ff953bbe4e15029274
SHA1: 347f28debd051083f0df2a1b7dd0458c8d26e4cd
SHA256: a9909447754b0151efb56f1b2b22da81184c9c9ed798be514100e969d96cc591
SHA512: e083a081943054a0d3f53e1756b4d4d69fd3d4ed786c14cbc3beeb158912fc0f2d72a90894829abeafae4d393836eb99a98528cf5767ba06828e6ee2250916d2
Homepage: https://github.com/BitSeq/BitSeq
Description-en: Bayesian Inference of Transcripts from Sequencing Data
BitSeq is an application for inferring expression levels of individual
transcripts from sequencing (RNA-Seq) data and estimating differential
expression (DE) between conditions. An advantage of this approach is the
ability to account for both technical uncertainty and intrinsic biological
variance in order to avoid false DE calls. The technical contribution to the
uncertainty comes both from finite read-depth and the possibly ambiguous
mapping of reads to multiple transcripts.
Description-md5: dd6aa18c8b254ecc1902ba90dfe7c413