How to Install and Uninstall blixem Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: November 22,2024

1. Install "blixem" package

This is a short guide on how to install blixem on Ubuntu 20.10 (Groovy Gorilla)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                blixem
            
                    
    
    Copied

2. Uninstall "blixem" package

Please follow the instructions below to uninstall blixem on Ubuntu 20.10 (Groovy Gorilla):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                blixem
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the blixem package on Ubuntu 20.10 (Groovy Gorilla)

Package: blixem
Architecture: amd64
Version: 4.44.1+dfsg-5ubuntu1
Priority: optional
Section: universe/science
Source: seqtools
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 2082
Depends: libc6 (>= 2.14), libcairo2 (>= 1.2.4), libcurl4 (>= 7.16.2), libgbtools0 (>= 4.44.1+dfsg), libgcc-s1 (>= 3.0), libglib2.0-0 (>= 2.35.9), libgtk2.0-0 (>= 2.14.0), libpango-1.0-0 (>= 1.14.0), libsqlite3-0 (>= 3.5.9), libstdc++6 (>= 5.2)
Filename: pool/universe/s/seqtools/blixem_4.44.1+dfsg-5ubuntu1_amd64.deb
Size: 1260032
MD5sum: 4870f8f4a24dc51676a5ead4ee6cff97
SHA1: 5fe7b8ced9367bbdcdbcf1701e9d72045e3fe85d
SHA256: 142856acdfd3749bae4e748ae6f16a6442f6042049312b7e94897b3917784930
SHA512: 59b4d7aa4de081de7030f9989f1ccbcd50e7b58b79146de5fe09c67423dd00620bae23f922b7948c2a78e9cdb8be8c0db91fa80fe272d974b67ab91a4a28bbce
Homepage: https://www.sanger.ac.uk/science/tools/seqtools
Description-en: interactive browser of sequence alignments
Blixem is an interactive browser of sequence alignments that have been
stacked up in a "master-slave" multiple alignment; it is not a 'true'
multiple alignment but a 'one-to-many' alignment.
.
* Overview section showing the positions of genes and alignments around
the alignment window
* Detail section showing the actual alignment of protein or nucleotide
sequences to the genomic DNA sequence.
* View alignments against both strands of the reference sequence.
* View sequences in nucleotide or protein mode; in protein mode, Blixem
will display the three-frame translation of the reference sequence.
* Residues are highlighted in different colours depending on whether
they are an exact match, conserved substitution or mismatch.
* Gapped alignments are supported, with insertions and deletions being
highlighted in the match sequence.
* Matches can be sorted and filtered.
* SNPs and other variations can be highlighted in the reference
sequence.
* Poly(A) tails can be displayed and poly(A) signals highlighted in the
reference sequence.
Description-md5: b15f2fb6e919e964e681fa77b856cbe0