How to Install and Uninstall edlib-aligner Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: November 07,2024

1. Install "edlib-aligner" package

Please follow the steps below to install edlib-aligner on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                edlib-aligner
            
                    
    
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2. Uninstall "edlib-aligner" package

Here is a brief guide to show you how to uninstall edlib-aligner on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                edlib-aligner
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the edlib-aligner package on Ubuntu 20.10 (Groovy Gorilla)

Package: edlib-aligner
Architecture: amd64
Version: 1.2.4-2ubuntu1
Priority: optional
Section: universe/science
Source: libedlib
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 69
Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2), libedlib0 (= 1.2.4-2ubuntu1)
Filename: pool/universe/libe/libedlib/edlib-aligner_1.2.4-2ubuntu1_amd64.deb
Size: 23032
MD5sum: d041d17b2674252f118d8e248991d216
SHA1: 955ea804a3ebd666243ec623e762ec858035a728
SHA256: 33cd0708d63145429e010439a92d2248eba74b27665bec77bbf74fb838a897d8
SHA512: 3cbb1f3e1a9d42405409218329e0e228f226c8e624826295d5755ae36f79e06df8f018eddecaf2de3c5eed6657ea79de7e17a3d2fac559cee369c405dce10819
Homepage: https://github.com/Martinsos/edlib
Description-en: edlib sequence alignment tool using edit distance
Edlib is a lightweight and super fast C/C++ library for sequence
alignment using edit distance. This package provides an aligner
using this library.
.
Features of libedlib
.
* Calculates edit distance (Levehnstein distance).
* It can find optimal alignment path (instructions how to transform
first sequence into the second sequence).
* It can find just the start and/or end locations of alignment path -
can be useful when speed is more important than having exact
alignment path.
* Supports multiple alignment methods: global(NW), prefix(SHW) and
infix(HW), each of them useful for different scenarios.
* You can extend character equality definition, enabling you to e.g.
have wildcard characters, to have case insensitive alignment or to
work with degenerate nucleotides.
* It can easily handle small or very large sequences, even when finding
alignment path, while consuming very little memory.
* Super fast thanks to Myers's bit-vector algorithm.
Description-md5: e9837a11b3f558a9827bd1f70164a326