How to Install and Uninstall idba-extra Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: May 10,2024

1. Install "idba-extra" package

Please follow the step by step instructions below to install idba-extra on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                idba-extra
            
                    
    
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2. Uninstall "idba-extra" package

Please follow the instructions below to uninstall idba-extra on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                idba-extra
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the idba-extra package on Ubuntu 20.10 (Groovy Gorilla)

Package: idba-extra
Architecture: amd64
Version: 1.1.3-7
Priority: optional
Section: universe/science
Source: idba
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 2611
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libstdc++6 (>= 5.2), python3, idba
Filename: pool/universe/i/idba/idba-extra_1.1.3-7_amd64.deb
Size: 408988
MD5sum: 1f6df80097ed93ae5517b507b4f0f895
SHA1: 27233999bda3c2eb09bcfdf8e59b5e79dfe887c1
SHA256: 4797ffc2187317353027e14e5d4433cdaefcbf832e682a8bd9ff524b94c92935
SHA512: 07a285033987877877c146cafdfa9c31d615ba12da9c248097ccc250c3f52599bd1a1f2fa98acc897655eacdd0efd7f7363c4b4d35400ffe55bfdfa5c63407d9
Homepage: https://github.com/loneknightpy/idba
Description-en: iterative De Bruijn Graph short read assemblers (extra tools)
IDBA stands for iterative de Bruijn graph assembler. In computational
sequence biology, an assembler solves the puzzle coming from large
sequencing machines that feature many gigabytes of short reads from a
large genome.
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This package provides several flavours of the IDBA assembler, as they all
share the same source tree but serve different purposes and evolved over time.
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IDBA is the basic iterative de Bruijn graph assembler for
second-generation sequencing reads. IDBA-UD, an extension of IDBA,
is designed to utilize paired-end reads to assemble low-depth regions
and use progressive depth on contigs to reduce errors in high-depth
regions. It is a generic purpose assembler and especially good for
single-cell and metagenomic sequencing data. IDBA-Hybrid is another
update version of IDBA-UD, which can make use of a similar reference
genome to improve assembly result. IDBA-Tran is an iterative de Bruijn
graph assembler for RNA-Seq data.
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This package ships extra tools for using idba in specific situations.
Description-md5: a65ebb2eaba7b514fa79dc9b01bc510a