How to Install and Uninstall python3-sqt Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: May 13,2024

1. Install "python3-sqt" package

Please follow the guidance below to install python3-sqt on Ubuntu 20.10 (Groovy Gorilla)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                python3-sqt
            
                    
    
    Copied

2. Uninstall "python3-sqt" package

This guide covers the steps necessary to uninstall python3-sqt on Ubuntu 20.10 (Groovy Gorilla):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                python3-sqt
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the python3-sqt package on Ubuntu 20.10 (Groovy Gorilla)

Package: python3-sqt
Architecture: amd64
Version: 0.8.0-4
Priority: optional
Section: universe/python
Source: python-sqt
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 436
Depends: libc6 (>= 2.14), python3 (<< 3.9), python3 (>= 3.8~), python3-cutadapt, python3-matplotlib, python3-pysam, python3-seaborn, python3-xopen, python3:any
Recommends: fonts-noto-color-emoji
Filename: pool/universe/p/python-sqt/python3-sqt_0.8.0-4_amd64.deb
Size: 134580
MD5sum: ae38fbf42bed9a1108c3b113093b5031
SHA1: ddadf9a71b85764e37f080ae756afd0c6c17f3f2
SHA256: c9cdcf3b47b4af0306d57e1333b018d66034b96f6a8fa801ca8c04899d8a0948
SHA512: b84054964d172bbcbca5217de7b4932aa1e319aa2f0dbbd218faa1b5e9e35bc9165c5e04baeecea34347435dbb815a5eab58a8b6b02542bb1262137fad72bfab
Homepage: https://bitbucket.org/marcelm/sqt
Description-en: SeQuencing Tools for biological DNA/RNA high-throughput data
sqt is a collection of command-line tools for working with
high-throughput sequencing data. Conceptionally not fixed to use any
particular language, many sqt subcommands are currently implemented
in Python. For them, a Python package is available with functions for
reading and writing FASTA/FASTQ files, computing alignments, quality
trimming, etc.
.
The following tools are offered:
* sqt-coverage -- Compute per-reference statistics such as coverage
and GC content
* sqt-fastqmod -- FASTQ modifications: shorten, subset, reverse
complement, quality trimming.
* sqt-fastastats -- Compute N50, min/max length, GC content etc. of
a FASTA file
* sqt-qualityguess -- Guess quality encoding of one or more FASTA files.
* sqt-globalalign -- Compute a global or semiglobal alignment of two strings.
* sqt-chars -- Count length of the first word given on the command line.
* sqt-sam-cscq -- Add the CS and CQ tags to a SAM file with colorspace reads.
* sqt-fastamutate -- Add substitutions and indels to sequences in a
FASTA file.
* sqt-fastaextract -- Efficiently extract one or more regions from an
indexed FASTA file.
* sqt-translate -- Replace characters in FASTA files (like the 'tr'
command).
* sqt-sam-fixn -- Replace all non-ACGT characters within reads in a
SAM file.
* sqt-sam-insertsize -- Mean and standard deviation of paired-end
insert sizes.
* sqt-sam-set-op -- Set operations (union, intersection, ...) on
SAM/BAM files.
* sqt-bam-eof -- Check for the End-Of-File marker in compressed
BAM files.
* sqt-checkfastqpe -- Check whether two FASTQ files contain correctly
paired paired-end data.
Description-md5: af37cd01facb2305c25529d7be11e4b3