How to Install and Uninstall r-other-chbutils Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: May 10,2024

1. Install "r-other-chbutils" package

Please follow the guidelines below to install r-other-chbutils on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                r-other-chbutils
            
                    
    
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2. Uninstall "r-other-chbutils" package

This tutorial shows how to uninstall r-other-chbutils on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                r-other-chbutils
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the r-other-chbutils package on Ubuntu 20.10 (Groovy Gorilla)

Package: r-other-chbutils
Architecture: amd64
Version: 0.1+git20171026.a226cee-1build1
Priority: optional
Section: universe/gnu-r
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian R Packages Maintainers
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 166
Depends: r-base-core (>= 4.0.0.20200528-1), r-api-4.0
Filename: pool/universe/r/r-other-chbutils/r-other-chbutils_0.1+git20171026.a226cee-1build1_amd64.deb
Size: 135424
MD5sum: 9d2ca923cc833da34b9f66562587d18b
SHA1: 1abd9312e5288406c13bbcc72bae0f9ac9c57bd3
SHA256: cda06a836ab22207dda2d43686bf80e390638497b416bd3a5b3ee6cfdcaca37b
SHA512: 0ee003f79548bfc6ffe6ecce43430133ed938ee5e9c04ede8f90babb8f9f0f3f541b432067e2e66e08c423883cfbfdac9506a74f9ac590ac4985ab7f9d84b5ec
Homepage: https://github.com/hbc/CHBUtils
Description-en: GNU R utilities from Harvard School of Public Health Bioinformatics
This GNU R package contains the following functions:
chb_utils-package chb_utils
annotate_df Annotate Dataframe containing Ensembl IDs with Gene
Symbols and Descriptions
boxplotoutliers Cel file IDs of intensity boxplot outlier arrays (in
characters).
chb_utils chb_utils
col2rownames add a column to a dataframe consisting of the
current rownames
convertIDs Get other Ids for genes in the same order
create_report Create report of QC
getTFpairs Get mouse TF-target pairs from opossum database
get_biomart Get biomart annotation from id
ggheatmap generate a heatmap + dendrograms, ggplot2 style
ggheatmap.show Display a ggheatmap
ggplotDispEsts Plot Dispersion Estimates - nicer ggplot version of
DESeq graph
mds Plot MDS
mdsplot.RGset MDS (MultiDimensional Scaling) Plots
nuseoutliers Cel file IDs of intensity NUSE outlier arrays (in
characters).
PCAplot.cds Pairwise Principal Component Analysis Plots of
CountDataSet objects
PCAplot.eset Pairwise Principal Component Analysis Plots
Plots the differntially expressed genes on an MA
plotDE plot, ggplot style If adjusted pvalues are present,
colors those that pass cutoff red
plot_dendro ggplot based dendrogram plot
print_enrichGO Clean and print results from enrichGO
Plots the pvalue quantiles against the uniform
qqplot_JH distribution. If adjusted pvalues are present,
colors those that pass cutoff red
rleoutliers Cel file IDs of intensity RLE outlier arrays (in
characters).
row2colnames add a column to a dataframe consisting of the
current rownames
runGO Run GO using clusterprofiler
variance_by_component Plot PC importance
volcano_density_plot Create volcano plot from log2FC and adjusted pvalues
data frame
write_report Write report of QC
Description-md5: 888e9eec1e46badab5d49cf0e667f7ba