How to Install and Uninstall ruby-fix-trinity-output Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: December 23,2024

1. Install "ruby-fix-trinity-output" package

Please follow the steps below to install ruby-fix-trinity-output on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                ruby-fix-trinity-output
            
                    
    
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2. Uninstall "ruby-fix-trinity-output" package

Please follow the steps below to uninstall ruby-fix-trinity-output on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                ruby-fix-trinity-output
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the ruby-fix-trinity-output package on Ubuntu 20.10 (Groovy Gorilla)

Package: ruby-fix-trinity-output
Architecture: all
Version: 1.0.0-2
Priority: optional
Section: universe/ruby
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Ruby Extras Maintainers
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 30
Depends: ruby | ruby-interpreter, ruby-trollop (>= 2.0)
Filename: pool/universe/r/ruby-fix-trinity-output/ruby-fix-trinity-output_1.0.0-2_all.deb
Size: 5084
MD5sum: 2e440bf13a23cb6c7d8ccdb956efaf63
SHA1: ae95e22c32b261dee1f766f965a187ab3180d4e1
SHA256: 4905dc9cc9724cc84fb40acf758127a20acf351414f56f9ca3344465c2b74f90
SHA512: 30ddcde4521cc9abbc0bb6dae2b90afa727aadec94617d2223f1b7c99c822406271d4cecd6d84649b41873a00b89342bddf832118c00fadb0efec053493060c5
Homepage: http://rubygems.org/gems/fix-trinity-output
Description-en: Fix output fastq files from trinityrnaseq
trinityrnaseq outputs fastq files that have been 'corrected'
.
Unfortunately these files are no longer properly paired and therefore can't be
used in most aligners such as bowtie2 and snap-aligner. This script attempts
to fix that and produce 2 properly paired fastq files and a fastq file
containing single reads
Description-md5: 3f69f71932ea2f46698f4c8c3290ad8e
Ruby-Versions: all