How to Install and Uninstall seqprep-data Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: May 20,2024

1. Install "seqprep-data" package

This tutorial shows how to install seqprep-data on Ubuntu 20.10 (Groovy Gorilla)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                seqprep-data
            
                    
    
    Copied

2. Uninstall "seqprep-data" package

This tutorial shows how to uninstall seqprep-data on Ubuntu 20.10 (Groovy Gorilla):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                seqprep-data
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the seqprep-data package on Ubuntu 20.10 (Groovy Gorilla)

Package: seqprep-data
Architecture: all
Version: 1.3.2-5
Priority: extra
Section: universe/science
Source: seqprep
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 35906
Depends: seqprep
Filename: pool/universe/s/seqprep/seqprep-data_1.3.2-5_all.deb
Size: 35858748
MD5sum: 3e21cd052ca5c97c9805f4f4a09b9366
SHA1: fff7201a67582e059598b72f91751fcc92ed020b
SHA256: 848cd9888d3b93be5ed4d697ccd2ce546d4bbacc314c8a59c46dc81348c174b7
SHA512: 4211abb70a2e8657592299d679b32deaba9f95d7b2d1e76fb4f0548bcd6a3de9aae6397af6f9e0096a99e6642d8104e6997da3be8516cc8d3092f7fe8defdf9f
Homepage: http://seqanswers.com/wiki/SeqPrep
Description-en: example data set for seqprep - only used for testing
SeqPrep is a program to merge paired end Illumina reads that are overlapping
into a single longer read. It may also just be used for its adapter trimming
feature without doing any paired end overlap. When an adapter sequence is
present, that means that the two reads must overlap (in most cases) so they
are forcefully merged. When reads do not have adapter sequence they must be
treated with care when doing the merging, so a much more specific approach is
taken. The default parameters were chosen with specificity in mind, so that
they could be ran on libraries where very few reads are expected to overlap.
It is always safest though to save the overlapping procedure for libraries
where you have some prior knowledge that a significant portion of the reads
will have some overlap.
.
This package is not needed for normal operation of seqprep. It simply
serves some test data as well as a test script.
Description-md5: ccb0a7c89eb600e892e0e099f0c0ab96