How to Install and Uninstall sga Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: December 29,2024

1. Install "sga" package

Please follow the step by step instructions below to install sga on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                sga
            
                    
    
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2. Uninstall "sga" package

This tutorial shows how to uninstall sga on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                sga
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the sga package on Ubuntu 20.10 (Groovy Gorilla)

Package: sga
Architecture: amd64
Version: 0.10.15-5build1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 2479
Depends: libbamtools2.5.1 (>= 2.5.1+dfsg), libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4), python3:any, samtools, python3-ruffus, python3-pysam
Recommends: abyss (>= 2.0.2-1)
Filename: pool/universe/s/sga/sga_0.10.15-5build1_amd64.deb
Size: 837556
MD5sum: ec4f9bec3d5edabe4aecfe1b62ec63ce
SHA1: 208fdaa2c359650188feb8de33cedb5034351e33
SHA256: b2f3e981edc650f8f532fcd9a88eb0306f8997c6825b3c095faa3d4d2f53b259
SHA512: 673a88c92b495b41e7d7179c388f991d1d354860e80da88119fc423800fb3e16b253252d9764cf25808ed2fc7944bb45a17592acfd0bc30d943d228a11c59a13
Homepage: https://github.com/jts/sga
Description-en: de novo genome assembler that uses string graphs
The major goal of SGA is to be very memory efficient, which is achieved by
using a compressed representation of DNA sequence reads.
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SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers'
string graph formulation of assembly and uses the FM-index/Burrows-Wheeler
transform to efficiently find overlaps between sequence reads.
Description-md5: 4551d08cc0a7516892fb0af250b69e37