How to Install and Uninstall sumatra Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: December 23,2024

1. Install "sumatra" package

Please follow the steps below to install sumatra on Ubuntu 20.10 (Groovy Gorilla)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                sumatra
            
                    
    
    Copied

2. Uninstall "sumatra" package

This guide let you learn how to uninstall sumatra on Ubuntu 20.10 (Groovy Gorilla):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                sumatra
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the sumatra package on Ubuntu 20.10 (Groovy Gorilla)

Package: sumatra
Architecture: amd64
Version: 1.0.36+ds-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 136
Depends: libc6 (>= 2.7), libsuma1 (>= 1.0.35)
Filename: pool/universe/s/sumatra/sumatra_1.0.36+ds-1_amd64.deb
Size: 80456
MD5sum: 0d7dfd32a218f7a9ec7eef3437ac154d
SHA1: d63a093262a05253b7649830e4b5e502da983024
SHA256: 0e0ac06effd52477202436bb50c0d301dee8af41b3243cd65faa77fd980f9aec
SHA512: 6925b4452ac7428e433095c678a53446fdbc00b4548b9fc80cb6e09186abaf77c1927f347d205cbbfe955d1e29f7044bb2f1849ab85858e2f9e75f9e8b67cac5
Homepage: http://metabarcoding.org/sumatra
Description-en: fast and exact comparison and clustering of sequences
With the development of next-generation sequencing, efficient tools are
needed to handle millions of sequences in reasonable amounts of time.
Sumatra is a program developed by the LECA. Sumatra aims to compare
sequences in a way that is fast and exact at the same time. This tool
has been developed to be adapted to the type of data generated by DNA
metabarcoding, i.e. entirely sequenced, short markers. Sumatra computes
the pairwise alignment scores from one dataset or between two datasets,
with the possibility to specify a similarity threshold under which pairs
of sequences that have a lower similarity are not reported. The output
can then go through a classification process with programs such as MCL
or MOTHUR.
Description-md5: df54db253b7fa1b832c922647993576a