Complete Guide: Installing yanagiba on Ubuntu 20.10 (Groovy Gorilla) 2024

1. Install "yanagiba" package

In this section, we are going to explain the necessary steps to install yanagiba on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                yanagiba
            
                    
    
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2. Uninstall "yanagiba" package

Please follow the steps below to uninstall yanagiba on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                yanagiba
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the yanagiba package on Ubuntu 20.10 (Groovy Gorilla)

Package: yanagiba
Architecture: all
Version: 1.0.0-2
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 32
Depends: python3-biopython, python3-nanomath, python3-pandas, python3:any
Filename: pool/universe/y/yanagiba/yanagiba_1.0.0-2_all.deb
Size: 6132
MD5sum: c325e9280a53aa4d0c2fd0ebbc32420e
SHA1: 3fae831191e46f573d7b77540cab7b6eed44d2d5
SHA256: 3b4623f49a6585f62c8bcf1c01015663f377c832c369a80a5e721fd5c830b82a
SHA512: 87ca3f3322fdcd31db7e746c50e6698a0209f5f0aa98d4a7169b6ff7c9460983fcbece3e6ffe9c8c188b6b268b7efacf5ab6068cb2d178c56b42cbd716c8da68
Homepage: https://github.com/Adamtaranto/Yanagiba
Description-en: filter low quality Oxford Nanopore reads basecalled with Albacore
Yanagiba is used to filter short or low quality Oxford Nanopore reads
which have been basecalled with Albacore. It takes fastq.gz and an
Albacore summary file as input. If no Albacore summary file is provided
attempt to calculate mean qscore from directly from fastq file using
NanoMath. Note: Calculated quality scores appear to be lower for reads
called with Metrichor, you may need to lower your minqual setting in
this case.
Description-md5: af57b968c50c6245e1c69de3c25cfcb8