How to Install and Uninstall crac Package on Ubuntu 21.04 (Hirsute Hippo)

Last updated: December 24,2024

1. Install "crac" package

Please follow the instructions below to install crac on Ubuntu 21.04 (Hirsute Hippo)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                crac
            
                    
    
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2. Uninstall "crac" package

Please follow the step by step instructions below to uninstall crac on Ubuntu 21.04 (Hirsute Hippo):


    
        
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                sudo apt remove
            
                        
                crac
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the crac package on Ubuntu 21.04 (Hirsute Hippo)

Package: crac
Architecture: amd64
Version: 2.5.2+dfsg-4
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 2269
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgkarrays1 (>= 2.1.0+dfsg), libgzstream0 (>= 1.5+dfsg), libhts3 (>= 1.10), libjellyfish-2.0-2 (>= 2.3.0), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4)
Filename: pool/universe/c/crac/crac_2.5.2+dfsg-4_amd64.deb
Size: 459768
MD5sum: b127cddece910b7192998ef56134fc7d
SHA1: 44c8162d9a674151a1ed808184cd017ceb8c95cb
SHA256: 8f4581971400de481f30d4c72a15a12b16a0c7ff6c018dc3125542b0688e63cc
SHA512: d92da76c448b829629332ae8d4788d1814557c7b8c78b29d8db84c30fae573652c14b4969de6654f092f112504e08cac47b718c8c859e9581ba9243d2679db8f
Homepage: https://crac.gforge.inria.fr/
Description-en: integrated RNA-Seq read analysis
CRAC is a tool to analyze High Throughput Sequencing (HTS) data in
comparison to a reference genome. It is intended for transcriptomic
and genomic sequencing reads. More precisely, with transcriptomic
reads as input, it predicts point mutations, indels, splice junction,
and chimeric RNAs (ie, non colinear splice junctions). CRAC can also
output positions and nature of sequence error that it detects in the
reads. CRAC uses a genome index. This index must be computed before
running the read analysis. For this sake, use the command "crac-index"
on your genome files. You can then process the reads using the command
crac. See the man page of CRAC (help file) by typing "man crac". CRAC
requires large amount of main memory on your computer. For processing
against the Human genome, say 50 million reads of 100 nucleotide each,
CRAC requires about 40 gigabytes of main memory. Check whether the
system of your computing server is equipped with sufficient amount of
memory before launching an analysis.
Description-md5: ce43e78949db57abc79ce3a5a699ad82